Blog post about the "Introduction to Nextflow" workshop in Montevideo last week. This workshop was organized by the lovely people of the ISCB Regional Student Group Uruguay rsg-uruguay.iscbsc.org. mberacochea.cc/posts/worksho…
@nextflow @RSG_Uruguay @JoaqunP58383072
I've recently joined the @nextflowio Ambassador program. I'm very excited to help grow the community around Nextflow. Being originally from 🇺🇾 (but now living in 🇬🇧), I want to help grow the LATAM Nextflow community.
BTW, I'm on the other place too bsky.app/profile/mberacochea…
🎉 We are excited to kick off the 2025 Nextflow Ambassador Program with a vibrant, diverse new cohort from 35+ countries! 🌍
Stay tuned for updates and inspiring stories from their journeys! ✨hubs.la/Q033j0Pr0
#Nextflow #NextflowAmbassadors
Martín Beracochea retweeted
Join EMBL-EBI as an IT Procurement Specialist! Lead tenders for IT hardware/software, ensure value for money, and support sustainability goals. Collaborate with IT, Finance & Legal teams to drive procurement excellence. #Procurement
embl.org/jobs/position/EBI02…
Martín Beracochea retweeted
🚀 We're hiring a Full Stack Software Developer for the RNA Resources team! Work with cutting-edge tech (Django, React, Kubernetes) to develop world-leading RNA databases like Rfam & RNAcentral. Shape RNA research globally! #FullStack #DeveloperJobs
embl.org/jobs/position/EBI02…
Martín Beracochea retweeted
Join our #webinar next week to discover MGnify Proteins, a new data resource for proteins identified through metagenomic analysis. Registration is free but essential: ebi.ac.uk/training/events/mg… #Bioinformatics #DataScience #Webinar #microbiome @MGnifyDB #metagenomics @emblebi
ALT Graphics image showing webinar at EMBL-EBI about A guide to Job Dispatcher sequence analysis tools and programmatic access. The webinar will run on 13 November 2024 at 15:30 GMT. The speaker is Evangelos Karatzas. Image credit: Louise Walker, EMBL-EBI
Martín Beracochea retweeted
Join @vagkaratzas on the 13th of November for a webinar: how our MGnify Proteins resource helps with exploration of the metagenomics sequence space. He'll demo newly released ways to query the dataset, and MGnifams - a new set of protein families derived from it.
We have a number of exciting webinars over the next month, which will go into more depth about several @emblebi resources including @uniprot @MGnifyDB @ebi_jdispatcher. You can also explore mouse phenotyping data with the @impc
Find out more: ebi.ac.uk/training/live-even…
ALT EMBL-EBI training Upcoming webinars Programmatic access to UniProt using Python A guide to Job Dispatcher sequence analysis tools and programmatic access MGnify Proteins: a new resource of 2.5 billion proteins for exploring metagenomics sequence space Investigating gene function and human disease through data on the IMPC portal
This was a huge effort, and I’m thrilled it’s finally out. :)
MGnify Proteins – our vast database of protein sequences derived from metagenomic sequencing – is now accessible via the web (ebi.ac.uk/metagenomics/prote…) and via @googlecloud BigQuery Public Datasets.
For the full news, see ebi.ac.uk/about/news/updates…
ALT Schematic of the MGnify Proteins resource. Metagenomic sequencing reads from a wide range of biomes are assembled. Protein sequences are predicted from these assemblies, and stored in a database of 2.5billion sequences. These are available via the web and ftp, searchable via HMMER and BigQuery, and structure predictions are also available.
Martín Beracochea retweeted
Pablo Cuevas 🇺🇾 se retiró a sus 38 años. Campeón de 6 títulos ATP en singles y de Roland Garros en dobles. Fue N°19 del mundo. Un coleccionista de grandes puntos. Disfruten.
Martín Beracochea retweeted
🚀New update to #AlphaFold Database: Foldseek now integrated!
Peer deeper into evolution with new structure-based search feature to find similar proteins with remote homology. The search includes experimentally-determined protein structures from @PDBe.
ebi.ac.uk/about/news/updates…
Martín Beracochea retweeted
🚨 UNDERCOVER: A few weeks ago I visited a salmon farm on the Faroe Islands– what I saw shocked me– it's an environmental and social disaster, it cannot go on.
Yet Bakkafrost in the UK are certified @rspcaassured– @RSPCA_official, do the right thing and drop the scheme 🎣🍣
Martín Beracochea retweeted
Coordinator @robdfinn was invited to present @BlueRemediomics developments again at #ISME19 in the marine ecology session - shown here is the updated version of the marine genomes catalogue in @MGnifyDB
Martín Beracochea retweeted
Excited to present our work on MGnify genome catalogues at #ISME19 Tuesday afternoon. We are up to ~0.5 million genomes and ~30k species across 12 biomes. Stop by to chat all things MAGs if attending.
Martín Beracochea retweeted
🥁 The #NextflowSummit program is finally here! Get ready for an exciting gathering in Barcelona from Oct 30 - Nov 1, where innovation meets expertise🌟
⏳ Hurry - only 2 weeks left to snag a 20% early-bird discount. Don’t miss out—secure your spot now: summit.nextflow.io/2024/barc…
Martín Beracochea retweeted
We are releasing OMG📷, an Open MetaGenomic dataset on @huggingface. Similar to FineWeb for NLP, OMG is a massive dataset for open-science in genomics. We train a genomic language model gLM2 on OMG, demonstrating new capabilities like unsupervised protein-protein interaction.
Introducing the 😱OMG dataset and 🤖gLM2! OMG is a massive Open MetaGenomic corpus totaling 3.1Tbp of data and 3.3B proteins. We train gLM2, the first mixed-modality genomic language model, on OMG. 1/🧵 #BioML #AI4Science
Martín Beracochea retweeted
Introducing the 😱OMG dataset and 🤖gLM2! OMG is a massive Open MetaGenomic corpus totaling 3.1Tbp of data and 3.3B proteins. We train gLM2, the first mixed-modality genomic language model, on OMG. 1/🧵 #BioML #AI4Science
We are thrilled to make the OMG dataset and gLM2 models available for the research community! Check out our latest preprint at tatta.bio/omg (BioRxiv link coming soon)
Martín Beracochea retweeted
mettannotator is a nextflow pipeline that generates an exhaustive annotation (GFF) of prokaryotic genomes. github.com/EBI-Metagenomics/…
Martín Beracochea retweeted
We've just released nf-test 0.9.0, with all the features described in our preprint! Check it out! 🚀 Thanks to all contributors!🙏 @nf_core @nextflowio
Changelog: github.com/askimed/nf-test/r…
🎉 We are excited to announce the preprint of nf-test 🚀 What began as a side project on a rainy weekend is now used by dozens of pipelines and >55,000 downloads🙏 (1/8)
biorxiv.org/content/10.1101/…
Martín Beracochea retweeted
The #NextflowSummit Barcelona lineup is finally here! 🎉Meet some of our speakers:
Martín Beracochea retweeted
⏳ This is just a sneak peek! Don’t wait—secure your ticket now and enjoy a 20% discount! 🎫🔥 Check out the full lineup of speakers here: summit.nextflow.io/2024/barc…
Martín Beracochea retweeted
Do not miss the mettaannotator, prokaryotic genome annotation pipeline: @Microbes biorxiv.org/content/10.1101/…
