Assistant Professor of Genome Informatics. Co-Creator of Michigan Imputation Server @umimpute. Co-Lead of @askimed_com. Creator of nf-test.
Innsbruck, Austria
Joined July 2011
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🎉 We are excited to announce the preprint of nf-test 🚀 What began as a side project on a rainy weekend is now used by dozens of pipelines and >55,000 downloads🙏 (1/8)
biorxiv.org/content/10.1101/…
Lukas Forer retweeted
This summer, @lukfor and I migrated the Michigan Imputation Server to @nextflowio. 2M genomes later, we can say it was a big success. As a Christmas gift, we’re excited to show you how to set up your own local server in under 10 minutes. #freeimputation
genepi.github.io/michigan-im…
Lukas Forer retweeted
Michigan Imputation Server, TOPMed Imputation Server, and Helmholtz Munich Imputation Server run all on our code. Now, we’re taking it a step further - anyone can build their own server. Watch my talk here: youtube.com/watch?v=ainEmE6z… #freeimputation
Got an idea for an nf-test plugin but worried about writing it in Java? 😨 Check out my new nf-test plugin for FASTQ files, written in Groovy 🎉 #Nextflow @nf_core
github.com/lukfor/nft-fastq
Great talk by @gau on making pipeline level tests with nf-test 🚀
youtu.be/VaKcd_qgBJc
Lukas Forer retweeted
And finally some nice improvements on pipeline level tests using with nf-test thanks to nft-utils: github.com/nf-core/nft-utils…, a new nf-test plugin that we at @nf_core just released yesterday.
Lukas Forer retweeted
Prince of Persia development journal update from 35 years ago today (August 13, 1989): "Today I put in the mouse."🐭
The moment when the princess's friend unexpectedly shows up to help the prince is one of my favorite in the game. My friend Tomi suggested it... 1/7
Lukas Forer retweeted
3/ 🚀 nf-test is a simple testing framework for Nextflow pipelines. A new step-by-step tutorial for how to use it with GitHub Actions is out which includes only testing any changed files.
⏩ nf-test.com/tutorials/github…
Lukas Forer retweeted
Great new functionality from @lukfor and co with nf-test. Running CI tests only on what's changing, and sharding to parallelise.
Keeping those tests speedy is key for a streamlined developer workflow 🚀
📚 Want to automate nf-test with GitHub Actions? 🚀 Check out our step-by-step tutorial for running nf-test on GitHub Actions. Learn how to distribute tests across multiple jobs and test only changed files for better efficiency. @nf_core @nextflowio
nf-test.com/tutorials/github…
Excited to see an increasing number of plugins for nf-test and bioinformatics file formats! 🚀🧬
Check out the full collection of available plugins, including VCF, FASTA, BAM and CSV.
🧩 Explore all plugins here: plugins.nf-test.com
Are you working with Nextflow, nf-test and VCF?
Today we're releasing the new VCF plugin for nf-test:
github.com/seppinho/nft-vcf
Quite impressive to see the list of available nf-test plugins:
plugins.nf-test.com/
@nextflowio @nf_core @EvanFloden
📚 Want to automate nf-test with GitHub Actions? 🚀 Check out our step-by-step tutorial for running nf-test on GitHub Actions. Learn how to distribute tests across multiple jobs and test only changed files for better efficiency. @nf_core @nextflowio
nf-test.com/tutorials/github…
We've just released nf-test 0.9.0, with all the features described in our preprint! Check it out! 🚀 Thanks to all contributors!🙏 @nf_core @nextflowio
Changelog: github.com/askimed/nf-test/r…
🎉 We are excited to announce the preprint of nf-test 🚀 What began as a side project on a rainy weekend is now used by dozens of pipelines and >55,000 downloads🙏 (1/8)
biorxiv.org/content/10.1101/…
🌐 nf-test is now the standard framework in the @nf_core community ❤️ We are super happy and thankful for their support, videos and tutorials. Special thanks go to Sateesh Peri, @gau, @E_Miller88, @NicolasVnk12646, @aka_hpatel, @adamrtalbot and all contributors 🙏 (7/8)
👩🏻💻 All new features are available in 0.9.0-rc2. Give it a try and install this pre-release with the following command. As usual, open an issue on GitHub to share your feedback or star our GitHub repo ⭐️ Happy testing! nf-test.com 🚀 (8/8)
🌐 nf-test is now the standard framework in the @nf_core community ❤️ We are super happy and thankful for their support, videos and tutorials. Special thanks go to Sateesh Peri, @gau, @E_Miller88, @NicolasVnk12646, @aka_hpatel, @adamrtalbot and all contributors 🙏 (7/8)
👩🏻💻 All new features are available in 0.9.0-rc2. Give it a try and install this pre-release with the following command. As usual, open an issue on GitHub to share your feedback or star our GitHub repository⭐️ Happy testing! nf-test.com🚀 (8/8)
