A computational pipeline designed to characterize repetitive DNA in next-generation sequencing data from plant and animal genomes. Developed by @MacasLab.
Joined December 2019
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RepeatExplorer retweeted
Registration open to the 12th @RepeatExplorer Workshop (May 27-29), this year focusing on repeat annotation in genome assemblies ! repeatexplorer.org/?page_id=…
RepeatExplorer retweeted
Excited to share our tools for LTR-retrotransposon annotation in plant genomes ! Supported by @ELIXIRCZ. doi.org/10.1093/nargab/lqae1…
RepeatExplorer retweeted
DANTE and DANTE_LTR: computational pipelines implementing lineage-centered annotation of LTR-retrotransposons in plant genomes. doi.org/10.1101/2024.04.17.5…
RepeatExplorer retweeted
Happy to share this nice collaborative work led by the very talented grad student @YMata_Sucre
Repeat-based phylogenomics shed light on unclear relationships in the monocentric genus Juncus L. (Juncaceae)
authors.elsevier.com/c/1hpxi…
RepeatExplorer retweeted
The spread of satellite DNAs in euchromatin and insights into the multiple sex chromosome evolution in Hemiptera revealed by repeatome analysis of the bug Oxycarenus hyalinipennis - Cabral‐de‐Mello - Insect Molecular Biology - Wiley Online Library resjournals.onlinelibrary.wi…
RepeatExplorer retweeted
@CamilleCornet17 1st thesis paper is out @molecology: #Holocentric repeat landscapes: From micro-evolutionary patterns to macro-evolutionary associations with karyotype evolution 👉 onlinelibrary.wiley.com/doi/…
Fantastic #RepeatExplorer workshop organized by @MacasLab. A huge thank you to our special guest @JohannConfais from @INRAE_URGI for his captivating presentation on REPET. Thanks to the backing of @ELIXIRCZ & @ELIXIREurope, this event marked the beginning of a new collaboration.
RepeatExplorer retweeted
So pleased to be funded by the @ELIXIREurope Travel Grant Scheme to present a demo at the @RepeatExplorer workshop with the computing facilities from @INRAE_URGI #PlantBioinfoPF and @ELIXIRCZ.
RepeatExplorer retweeted
🔥ADVANCE ACCESS🔥: Investigating the diversification of holocentromeric satellite DNA Tyba in Rhynchospora (Cyperaceae)
doi.org/10.1093/aob/mcad036?…
RepeatExplorer retweeted
Register to the @RepeatExplorer workshop which will take place on May 23-25 ! This year also featuring the REPET pipeline presented by @JohannConfais. More info and registration: repeatexplorer.org/?page_id=…
RepeatExplorer retweeted
Happy to share our latest work on the disruption of the standard #kinetochore in #holocentric #Cuscuta plants: doi.org/10.1101/2023.01.04.5…
RepeatExplorer retweeted
Phylogenetic relationships and repeatome analysis in the South African genus Pteronia: frontiersin.org/articles/10.…
@IBOTCZ @CEITEC_Brno @sci_muni
RepeatExplorer retweeted
A giant, multi-domain #centromere of garden pea assembled ! Check out our preprint doi.org/10.1101/2022.10.25.5…
RepeatExplorer retweeted
Great collaboration with the excellent team led by @marques_et_al ! Supported by @ELIXIRCZ and #GACR.
RepeatExplorer retweeted
Happy to share our new paper published in @MolBiolEvol:
Repeat dynamics across timescales: a perspective from sibling allotetraploid marsh #orchids
doi.org/10.1093/molbev/msac1…
#polyploidy #transposableElements #mobileDNA
@CeciliaMimmi 1st author, @TeriMandakova, @__mcjamie__ & others
RepeatExplorer retweeted
The #ecology of palm genomes: repeat-associated genome size expansion is constrained by aridity @RowanSchley @cfbarrett999 @SidonieBellot @RepeatExplorer @BillJBaker @DrSDodsworth @leitch_ar @IliaLeitch ow.ly/QYWI50JVNTJ
ALT Summary of the similarities between repeats in a genome and organisms within an ecological community.
RepeatExplorer retweeted
Genomes, repeatomes and interphase chromosome organization in the meadowfoam family (Limnanthaceae, Brassicales) @ThePlantJournal
onlinelibrary.wiley.com/doi/…
@CEITEC_Brno @sci_muni @muni_cz
