Plant Biotechnology and Bioinformatics. Contact: https://xitter.cf/t.co/7jMiDcnRoT #PlantGenomics #SpecializedMetabolites #SynBio
Bonn
Joined March 2021
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Leaving Twitter for obvious reasons #eXit
BlueSky: puckerlab.bsky.social
LinkedIn: @PuckerLab
Web: mps.uni-bonn.de
Plant Biotechnology and Bioinformatics retweeted
Investigation of the R2R3-MYB gene family in chickpea with collaborators at Bielefeld University and NIPGR:
doi.org/10.1007/s00425-022-0…
#MYBs #Evolution 7/🧵
Plant Biotechnology and Bioinformatics retweeted
Molecular and physiological characterization of brassinosteroid receptor BRI1 mutants in Sorghum bicolor
Rico-Medina et al. @cragenomica
📖 nph.onlinelibrary.wiley.com/…
ALT Introducing Sorghum ethylmethanesulfonate mutant alleles ems87 and ems72 of BRASSINOSTEROID INSENSITIVE 1 receptors in Arabidopsis does not restore growth defects nor sensitivity to brassinolide, confirming allele loss of function.
Plant Biotechnology and Bioinformatics retweeted
A genomic region linked to tolerance against beet cyst nematodes (BCN), a major sugar beet pest, was identified. A cluster of NLP7-like genes appear to play a crucial role - opening doors for BCN-resistant cultivars! 🌱🧬
doi.org/10.1186/s12864-023-0…
#PlantScience #Genomics 20/🧵
Plant Biotechnology and Bioinformatics retweeted
Vaccinium species are not just tasty—they're packed with flavonoids that boost health & color! 🌿🔬 Recent advances in genomics are unlocking the secrets of these superfruits, paving the way for better berries! 🫐
doi.org/10.1093/plphys/kiad2…
#PlantScience #Genomics #Flavonoids 11/🧵
Plant Biotechnology and Bioinformatics retweeted
🍌 Bananas with a health boost? This study uncovers key transcription factors regulating anthocyanin biosynthesis in bananas! By decoding the MBW complex, the way for anthocyanin-packed bananas is paved:
doi.org/10.1186/s13104-023-0…
🌱🔬 #BananaScience #Anthocyanins #Biotech 12/🧵
Plant Biotechnology and Bioinformatics retweeted
🌿❄️ In the freezing, UV-intense Himalayas, Rheum nobile developed specialized leaves that trap warmth and filter light — creating mini-greenhouses. Genome analysis uncovers genetic networks behind this adaptation: doi.org/10.1038/s42003-023-0…
#Evolution #Botany #Genomics 14/🧵
Plant Biotechnology and Bioinformatics retweeted
Great Postdoc job, fascinating biological system. Study evolution in action based on large-scale sequence data - check it out!
Plant Biotechnology and Bioinformatics retweeted
Plants are molecular goldmines! 🌿🔬 New advances in plant genomics unlock their medicinal potential by mapping biosynthetic genes. A data-driven revolution for drug discovery! 🚀
doi.org/10.1186/s12864-023-0…
#Genomics #MedicinalPlants #Biotech 15/🧵
Plant Biotechnology and Bioinformatics retweeted
🌱 @denbiOffice 🌱 will be supporting the @PLANT2030 "Introduction to #Bioinformatics" Spring School for early-stage #PlantScientists. Join us at @LeibnizIPK in Gatersleben from May 13-16!
For more details, visit: denbi.de/training-courses-20… 🌿 #PlantScience #Bioinformatics
Plant Biotechnology and Bioinformatics retweeted
A first genomic look at Ceratophyllum submersum, a plant thriving in eutrophic waters. This study assembled its plastome, shedding light on its evolution:
doi.org/10.1186/s13104-023-0…
#Genomics #Eutrophication #PlantScience 16/🧵
Plant Biotechnology and Bioinformatics retweeted
Ecstatic to share that the hard work of the @AgBioData data reuse WG is out today in @GigaScience! Read to learn about the R in FAIR ♻️
#Bioinformatics #DataScientists #agriculture #datareuse
academic.oup.com/gigascience…
Plant Biotechnology and Bioinformatics retweeted
Boosting data literacy through hands-on genomics: Students dive into DNA sequencing, genome assembly, and gene annotation - gaining real-world skills while leading their own research projects:
doi.org/10.1515/jib-2023-003…
#Genomics #DataLiteracy #STEMEducation 21/🧵
Plant Biotechnology and Bioinformatics retweeted
Meet bHLH_annotator - a Python-based pipeline for automated functional annotation of bHLH transcription factors! It streamlines phylogenetic classification, detects key motifs, & enhances genome-wide studies in plants:
doi.org/10.1186/s12864-023-0…
🌱💡 #Genomics #Bioinformatics 22/🧵
Plant Biotechnology and Bioinformatics retweeted
🌿🎨🧬 How were anthocyanins replaced by betalains? Multiple independent losses of the central anthocyanin synthesis gene TT19 and disruptions in the key regulatory complex:
doi.org/10.1111/nph.19341
#Evolution #Pigments #PlantScience 24/🧵
Plant Biotechnology and Bioinformatics retweeted
🌿🧬 On the future of plant genomics: From long-read sequencing to AI-powered functional annotation, this review explores the latest breakthroughs & key challenges in decoding plant genomes. Contains curated list of tools!
preprints.org/manuscript/202…
#Genomics #Bioinformatics 26/🧵
Plant Biotechnology and Bioinformatics retweeted
🎨🌿 What drives color variation in plants? A large-scale analysis across flowering plants reveals that MYB transcription factors are the most common culprits behind anthocyanin loss! 🌺🧬
doi.org/10.1186/s12870-024-0…
#Genomics #PlantEvolution #Anthocyanins 27/🧵
🧬🔍 Introducing NAVIP – a new tool for predicting variant impacts more accurately! Unlike traditional methods, NAVIP considers the effect of neighboring variants within coding sequences:
doi.org/10.1371/journal.pcbi…
#Genomics #Bioinformatics #VariantCalling 30/🧵
🌱🔬 Maximizing data reuse in agricultural genomics! Key challenges - metadata gaps, interoperability, access barriers - and proposes solutions to unlock the full potential of genomic data. 🚀🌾
doi.org/10.1093/gigascience/…
#Genomics #OpenScience 29/🧵