PostDoc with #CoranderLab @OCBE_UniOslo & @Oslounivsykehus | Microbial evolution 🦠🧬
Oslo
Joined March 2018
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Jessica Calland retweeted
Really excited to share that our study is finally published in @Nature ! Longer post to follow but thanks so much to all of my co-authors, supervisors, the GPS consortium, and reviewers. @noemielefrancq @hsalje @StephenBentley5 @pneumowatch nature.com/articles/s41586-0…
Jessica Calland retweeted
Our LDWeaver paper is out now in NAR Genomics & Bioinformatics: doi.org/10.1093/nargab/lqae0…
LDWeaver detects unusually high LD in bacterial genomes to identify long and short-range gene interactions: epistasis & co-selection
R package: github.com/Sudaraka88/LDWeav…
Our study on combining genomics with autogenous vaccine design to control Campylobacter in poultry is out today in npj Vaccines!
nature.com/articles/s41541-0…
Jessica Calland retweeted
🚨Postdoc fellowship🚨If you are interested in how bacterial pathogen evolves to escape vaccine, do get in touch with me! #Bioinformatics #omics @pneumowatch
We'd welcome applications to work on bacterial genomics and evolution at @MilnerCentre @UniofBath, do get in touch with any of us (on Twitter: @EpicFeil_ , @LaurenCowley4 , @apreston243 , @stephlo_lo )
Jessica Calland retweeted
It's out! Further exploring different ST131 clade success in UK/Norway due to abx use!
Modulation of multidrug-resistant clone success in E. coli populations: a longitudinal, multi-country, genomic and antibiotic usage cohort study - The Lancet Microbe thelancet.com/journals/lanmi…
New preprint describing how we can use genomics to design autogenous poultry vaccines to reduce Campylobacter levels entering the food chain:
🚨🐔🦠🍗
biorxiv.org/content/10.1101/…
Jessica Calland retweeted
Genomic tailoring of autogenous poultry vaccines to reduce Campylobacter from farm to fork biorxiv.org/cgi/content/shor… #biorxiv_micrbio
Jessica Calland retweeted
📰Read 'Population structure and antimicrobial resistance among Klebsiella isolates sampled from human, animal, and environmental sources in Ghana: a cross-sectional genomic One Health study' by @sangerinstitute @UDSGhana & others in @LancetMicrobe ⤵️
sciencedirect.com/science/ar…
Jessica Calland retweeted
The first genomic surveillance of Klebsiella bacteria in Ghana shows that some strains of heavily #antibioticresistant bacteria are not found outside of hospitals🧬
Full story ⤵️
sanger.ac.uk/news_item/antib…
Very happy to see this study finally online with @LancetMicrobe 🦠
We carried out a genomic surveillance of #Klebsiella in Ghana 🇬🇭 within clinical and non-clinical settings to categorise #AMR
thelancet.com/journals/lanmi…
We then compared our findings from Ghana to the population structure and AMR-virulence profiles of #Klebsiella seen in Italy 🇮🇹 and Northern Norway 🇳🇴
It was a real pleasure getting to work on this with @EpicFeil_ @midichloria @harryafwthorpe (among others not on here)!
Jessica Calland retweeted
New research article
Population structure and antimicrobial resistance among #Klebsiella isolates sampled from human, animal, and environmental sources in Ghana: a cross-sectional genomic One Health study
thelancet.com/journals/lanmi…
#AMR #ESBL #InfectiousDiseases #OpenAccess #OA
ALT Background One Health approaches to address the increasing threat of antimicrobial resistance (AMR) are gaining attention. However, data on the distribution and movement of bacteria and their AMR-associated genes between clinical and non-clinical sources are scarce, especially from low-income and middle-income countries. We aimed to analyse Klebsiella isolates from various sources in Ghana and compare the prevalence of AMR with datasets from two other countries. ... Background One Health approaches to address the increasing threat of antimicrobial resistance (AMR) are gaining attention. However, data on the distribution and movement of bacteria and their AMR-associated genes between clinical and non-clinical sources are scarce, especially from low-income and middle-income countries. We aimed to analyse Klebsiella isolates from various sources in Ghana and compare the prevalence of AMR with datasets from two other countries.
Jessica Calland retweeted
Pangenome annotations, pangenome annotations, get your pangenome annotations. Accurate and fast, right here
genome.cshlp.org/content/ear…
@SamuelHorsfield @gerrythill
(ggcaller now out in Genome Research)
Jessica Calland retweeted
We are excited to present our new solution to type bacterial plasmids: mge-cluster (available in conda!) @Becctococcus @JGamma3 @Orjan_Samuelsen @Paal_Johnsen @valflanza @gerrythill and others from Jukka's lab 😎. Thread below (with gifs!!) 🧵
academic.oup.com/nargab/arti…
Jessica Calland retweeted
An overwhelming amount of content at this years #ECCMID23
Please do think of #JMedMicro when it comes to submitting your article - or send me a DM if you have ideas for a review or a collection
@MicrobioSoc #publishingforthecommunity
Very happy to share our latest preprint on AMR in Klebsiella in Ghana 🇬🇭: dx.doi.org/10.2139/ssrn.4349…
@kaisahaukka @KosiSaba Akosua Karikari Stephen kpordze Atanyiwoen Brusah Marta Corbella Cristina Merla @Orjan_Samuelsen @EpicFeil_ @midichloria @harryafwthorpe and Jukka Corander
Jessica Calland retweeted
We are excited to share the preprint behind mge-cluster, our new pipeline to cluster plasmid sequences @Becctococcus @JGamma3 @AnitaSchurch @valflanza @Orjan_Samuelsen @Paal_Johnsen
Consistent typing of plasmids with the mge-cluster pipeline biorxiv.org/cgi/content/shor… #biorxiv_bioinfo
Jessica Calland retweeted
🚨 Catching up with a preprint we posted last week: Multiple hypervirulent methicillin-sensitive Staphylococcus aureus lineages contribute towards poor patient outcomes in orthopedic device-related infections
medrxiv.org/content/10.1101/…
