@jmchilton

Software developer working on all things #usegalaxy and a co-founder of the #commonwl project. pan, non-binary, he/him 🏳️‍🌈

 State College, PA
Joined May 2007
  • Tweets5.9K
  • Following427
  • Followers610
248Media
The #usegalaxy code architecture video playlist has been updated bit.ly/gx-arch-vids. This contains nearly 3 hours and 20 minutes of content across 9 videos with almost 2 hours of new and updated content for the 2021 community conference...
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3 days lest to apply for the 2023 JXTX + CSHL Genome Informatics Scholarship. Go now to jxtxfoundation.org/news/2023…
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Interested in how @galaxyproject can be a powerful framework for #teaching? Stop by my poster #ISMBECCB2023 C-032 today or check it online: bit.ly/gtn-ismb-23 @gxytraining @Gallantries_EU
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Great to see @usegalaxyp 's publication #50 being accepted on its eleventh anniversary! Congratulations @SurbhiBihani3 @Sanjeeva_IITB and @usegalaxyp team on this @JProteomeRes publication on #COVID19 #Metaproteomics using #usegalaxy resources. pubs.acs.org/doi/10.1021/acs…
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John Chilton retweeted
AFL-CIO ✊
@AFLCIO20 Apr 2023
We're still here, but we don't give our money to union-busting billionaires. Bye bye blue check!
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John Chilton retweeted
Wendi Bacon@WendiBacon127 Feb 2023
Replying to @galaxyproject @genomeresearch
The training skeleton is boss and I wish universities had stuff like that for regular teaching!
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Planemo paper in @genomeresearch is out: genome.cshlp.org/content/ear…. Discover the magic of Planemo (github.com/galaxyproject/pla…) with @galaxyproject! #usegalaxy
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John Chilton retweeted
Dave Clements@tnabtaf25 Feb 2023
The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond by @simonbray18 @jmchilton et al genome.cshlp.org/content/ear… #UseGalaxy
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Actually this is an important tool for members of a community to safeguard their own mental health and psychological safety. It’s not about harassment, because it only looks at creators you follow.
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“Why must you always concentrate on color?” As always, this answer from James Baldwin is what you were looking for. Must watch. #BlackHistoryMonth
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"Software design is an exercise in human relationships." -- Kent Beck (@kentbeck)
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John Chilton retweeted
Randall Munroe
@xkcd27 Jan 2023
Code Lifespan xkcd.com/2730
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✨The good news of the day🤗 📰Our @gxytraining paper "@galaxyproject #training: A powerful framework for teaching!" is now published #PLOSCompBio ➡️ journals.plos.org/ploscompbi… ❤️Thanks to all GTN & Galaxy ecosystem contributors, & to the reviewers for their valuable comments

Galaxy Training: A powerful framework for teaching!

There is an ongoing explosion of scientific datasets being generated, brought on by recent technological advances in many areas of the natural sciences. As a result, the life sciences have become...

journals.plos.org
Bérénice Batut@bebatut7 Jun 2022
Why is @galaxyproject a powerful framework for #teaching and #training? A thread 🧵 (1)
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If Chicken McNuggets are sold in packs of 6, 9, or 20, then 43 is the largest number of nuggets that cannot be ordered.
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John Chilton retweeted
Wendi Bacon@WendiBacon115 Dec 2022
Replying to @galaxyproject
THIS changes everything
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And just like that the multi-year work of migrating @galaxyproject's API to @FastAPI gets us a smart @typescript API client 🥳🚀. Thanks to everyone who contributed and built the awesome libraries we're using! github.com/galaxyproject/gal….

Add autogenerated typescript API client & use it by mvdbeek · Pull Request #15106 · galaxyproject...

I've included a script to generate the openapi json and the autogenerated schema/index.ts file. You can update the client with make update-client-api-schema. As a first example I've...

github.com
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All those new AI driven code suggestion tools are a great resource. However, I think a major task now will be to avoid that future programmers just blindly rely on these, as that will lead to replication (and probably self-reinforcement) of suboptimal code. (1/2)
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Very sad for the passing of our dear friend and colleague Simon Gladman biocommons.org.au/news/simon…

Remembering Simon Gladman — Australian BioCommons

Simon was a treasured role model, a generous supporter and a trusted advisor to his Australian BioCommons, Melbourne Bioinformatics and Galaxy Australia team members. Simon has been a community...

biocommons.org.au
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I will miss you so much, my dear friend. Thanks for being one of my favorite humans.
Galaxy Project@galaxyproject28 Nov 2022
Remembering Simon Gladman: a Galaxy star goes dim galaxyproject.org/news/2022-…

Remembering Simon Gladman: a Galaxy star goes dim

Have you seen my new watch?

galaxyproject.org
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John Chilton retweeted
Wendi Bacon@WendiBacon123 Nov 2022
Bake your research is officially a Bacon Brigade requirement from now on MMMM looking forward to lab meeting!
Marisa Loach@Marisa_Loach22 Nov 2022
Here's a cake-based explanation of single cell RNA sequencing for #BakeYourResearch
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