@Icy_BioImaging
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Icy is an #opensource #BioImageAnalysis software to visualize, annotate and quantify bioimaging data. Get started: https://nitter.cf/t.co/Lhi3rFAmNu
@institutpasteur
Joined August 2017
- Tweets314
- Following3.9K
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Dear all,
we and many others from the bioimaging community have moved to Bluesky!
You can now find and follow us @icybioimaging.bsky.social
See you soon!
Happy New Year from the Icy team!!
💡 BioFlow is an image-based method able to extract velocities, pressure and forces inside living cells observed in fluorescence microscopy 🔬🖥️
icy.bioimageanalysis.org/plu…
👉 The lateral movement of fan-shaped amoeboid cells is not pressure-driven ‼️
Less than 24h for an exciting exercise that says "Load, use and fine-tune models from @bioimageio using #DL4MicEverywhere... and export them back to the #BioImageModelZoo format to reuse them in @ilastik_team @deepImageJ @Icy_BioImaging let's see how optimistic this can be 😎
🔬💻 The @EBItraining virtual course "Microscopy data analysis: machine learning and the BioImage Archive" starts today! The week comes packed with insights into #ZeroCostDL, @BioimageA, AI4Life tools, and more!
Icy retweeted
Now available on Scientific Reports nature.com/articles/s41598-0…
Can't be happier about the new #JDLL from @carlosg91018370 @jytinevez and JC Olivo-Marín being published already!🥳 Congratulations to all!🍾 Looking forward to seeing the consumer box crowded 🤖and the new requests to keep this library growing 🚀 rdcu.be/dvqwn
Out last week from the Tinevez and Olivo-Marin labs! JDLL: a library to run deep learning models on Java bioimage informatics platforms. This is sure to streamline deployment of DL models in bioimaging. nature.com/articles/s41592-0…
Icy retweeted
Out last week from the Tinevez and Olivo-Marin labs! JDLL: a library to run deep learning models on Java bioimage informatics platforms. This is sure to streamline deployment of DL models in bioimaging. nature.com/articles/s41592-0…
Icy retweeted
Super proud of this work and it was done with awesome colleagues. Let's now put this tool to good use!
Out last week from the Tinevez and Olivo-Marin labs! JDLL: a library to run deep learning models on Java bioimage informatics platforms. This is sure to streamline deployment of DL models in bioimaging. nature.com/articles/s41592-0…
Icy retweeted
Thrilled to announce our latest paper, 'JDLL' is now published in @NatureMethods! A perfect start to the New Year 🥳 and a fantastic gift from the Reyes Magos! 🌟 Check it out here: rdcu.be/dvqwn Happy Reading & Happy New Year to all! 📚🎆
@Icy_BioImaging @deepImageJ
🎉Exciting news! The @Icy_BioImaging team, along with @deepImageJ, is thrilled to announce the release of the 𝗝𝗮𝘃𝗮 𝗗𝗲𝗲𝗽 𝗟𝗲𝗮𝗿𝗻𝗶𝗻𝗴 𝗟𝗶𝗯𝗿𝗮𝗿𝘆 (𝗝𝗗𝗟𝗟), the new open source core library for #DeepLearning model inference in imaging! 🤖
Icy retweeted
All the chances!
In addition, the plugin (called DeepIcy) will be intended to be as easy as opening an image and clicking on run.
Icy retweeted
Coming soon to @Icy_BioImaging ...
Run #stardist on your images without code using the Bioimage.io models.💥💥
Thanks to #JDLL and #appose, we're bringing the power of Deep Learning and Python to the easy-to-use Java world.
Much more is coming!
Icy retweeted
Last days to apply!
(deadline is Wednesday)
We are hiring!
forum.image.sc/t/research-en…
We are looking for a bioimage analyst to work within the core facility, but collaborating on the projects of the users of France-Bioimaging (that is: roughly all France).
imaging.
📣 The Call for application to the Pasteur-Paris University International Doctoral Program is now open
Deadline 📆 31/10/23
Apply now 👉 ppu.pasteur.fr/ppu_etud_accu…
#PhDProgram #EmergingInfectiousDiseases #AntiMicrobialResistance
The #ISBI2024 Call for Papers is now open! All submissions must be original and not under concurrent review at any other conference or journal. Submit your papers by November 10. Learn more here: hubs.la/Q022jclr0
halo #javadevelopers!! 🗣️Did you see the last masterpiece 🌟 of @carlosg91018370 and colleagues @Icy_BioImaging @deepImageJ for 𝗗𝗟 𝗲𝗻𝗮𝗯𝗹𝗲𝗱 #𝗯𝗶𝗼𝗶𝗺𝗮𝗴𝗲𝗮𝗻𝗮𝗹𝘆𝘀𝗶𝘀 😎? 👇 Looking forward to new tools and pipelines exploiting it 😍
#JDLL
arxiv.org/abs/2306.04796
🎉Exciting news! The @Icy_BioImaging team, along with @deepImageJ, is thrilled to announce the release of the 𝗝𝗮𝘃𝗮 𝗗𝗲𝗲𝗽 𝗟𝗲𝗮𝗿𝗻𝗶𝗻𝗴 𝗟𝗶𝗯𝗿𝗮𝗿𝘆 (𝗝𝗗𝗟𝗟), the new open source core library for #DeepLearning model inference in imaging! 🤖
Icy retweeted
🔜Next @BCI_Pasteur seminar this Tuesday
Aydogan Ozcan @InnovateUCLA from @UCLAengineering
Deep Learning-enabled Computational Microscopy and Diffractive Imaging
Invited by @BiaUnit
Icy retweeted
📢 Exciting news! We are thrilled to announce the launch of deepImageJ 3.0! 🎉 Our latest release brings, thanks to the connection with #JDLL, new features and improvements to enhance your image analysis workflows in @FijiSc
deepimagej.github.io/