Human And Vertebrate Analysis aNd Annotation (HAVANA) team, part of the Ensembl group at the European Bioinformatics Institute.

Joined November 2011
We are excited to publish our second-ever Registered Report! The #LRGASP Consortium evaluated various methods for transcript identification and quantification using long-read sequencing technologies. @anaconesa @TheSheynkmanLab @TheBrooksLab @calizavi nature.com/articles/s41592-0…
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GencodeGenes retweeted
I´m thrilled to see our #LRGASP paper published in @naturemethods today. This is the work of many to benchmark long-read methods for transcriptomics, and a must-read paper for those using lrRNA-seq. Special thnks to @FJPardoPalacios and @TheBrooksLab (1/6) rdcu.be/dJ9ev
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GencodeGenes retweeted
DNA and RNA sequencing methods are rapidly evolving, each with its own benefits and challenges. Find out how the Long-read RNA-Seq Genome Annotation Assessment Project (LRGASP) can help you choose the right long-read sequencing method for your research. nature.com/articles/s41592-0…
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GencodeGenes retweeted
If you are attending #ESHG2024 come and talk to us at 20.063.D in the poster area about our initiative to annotate non-canonical ORFs @ensembl #bioinformatics #genomics #berlin
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We had an amazing attendance this morning for the @ensembl workshop at #ESHG2024 #berlin 🎉 @EBItraining @emblebi
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🥳👇🧠Calling all RN-Aficionados! The deadline for #ncRNA2024 has been extended to 11 June. Remaining places are filling fast so be sure to submit your Abstract ASAP. @RNASociety @jrRNAscientists @NCCR_RNADisease @GencodeGenes @NCCR_RNADisease @RNASociety #RNA #ncRNA #lncRNA
📢Following great interest and numerous requests, the submission deadline for #ncRNA2024 has been extended to 11 June!🧬 ⁠📅Submit your abstract now to claim our Early Bird offer 🐦bit.ly/3vXOwGl 🌟Don’t miss this last chance to showcase your research to the best and brightest in the ncRNA community!✨
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You might know someone but you will definitely come across people whom you do not know that are somehow connected to you It’s a pleasure to discover these connecting 🧵s #BoG24 Known: #PEC2 data harmonization Me ↔️ @julcollado ↔️ @GuigoLab Unknown: #recount3 ➡️ @GencodeGenes
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👀👇☀️Dear Colleagues, there are 2 weeks left to submit an abstract at our October conference #ncRNA2024! Why come? -Brilliant international speakers -fantastic city -loads of networking + social time -high probability of selected talks. So come join us!
⚠️Two weeks left to submit your abstracts for #ncRNA2024!⚠️ 👥Don't miss out on the opportunity to meet with leading experts in the field and catch up on their latest research and breakthroughs
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GencodeGenes retweeted
Are you attending #ASHG23? Join our interactive lunch-time workshop to learn all about #Ensembl Variation data and @GencodeGenes: ⏰ 12:15 – 13:15 EDT 📆 Thu, 2 Nov '23 📍 Room 152, Walter E. Washington Convention Centre, Washington D.C. #bioinf #genomics #EnsemblTraining
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Our paper is out in @nature! This is from a @cshlbanbury meeting where a group of scientists got together to ask, can we ever identify the complete set of human genes? And how do we do that? with @elapertea @av_sparrow @carninci and many others nature.com/articles/s41586-0…
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Replying to @wingfestuk
@wingfestuk loved today in London but please clarify the policy with reusable cups at the bars. Either it’s ‘each cup costs £1 and we will refund any brought back’ or ‘we only refund if buying more beer’ as I experienced
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GencodeGenes retweeted
Congratulations to our data resources selected by @globalbiodata as critical resources for the life sciences and biomedical research worldwide! ebi.ac.uk/about/news/announc…
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IT HAS HAPPENED!!!
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Are you, or do you know, an ambitious student looking for a fully-funded #PhDposition at frontier #genomics and #DataScience?? Check out this amazing opportunity from @GencodeGenes. Work at a world-leading institute @CRGenomica with inspiring colleagues! > tinyurl.com/gencodephd
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Standardized annotation of translated open reading frame go.nature.com/3REJdSg
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Researchers from @MDC_Berlin, EMBL-EBI, @broadinstitute and colleagues aim to add previously unexplored open reading frames into human genome databases. ebi.ac.uk/about/news/researc…
GencodeGenes retweeted
This Ribo-Seq ORF annotation incorporated into @GencodeGenes will help anyone working on human genome better understand what is really translated nature.com/articles/s41587-0…
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GencodeGenes retweeted
Despite years of research, there is still uncharted territory in the human genome that remains to be explored. New work identifies over 7,000 ORFs to add to all the major human genome databases. embl.org/news/research-highl…