امیدوارم که خانواده هاتون سالم باشن، چشمهامون اشک آلوده برای ایران، برای کودکان و ادم های بیگناه که به خاک و خون کشیده شدن. برای همه دانشجویان ایرانی در زمینه هوش مصنوعی و بیوانفرماتیک و زیست شناسی محاسباتی که دچار مشکل شدن برای ادامه تحصیل یا تحقیقاتشون، به من ایمیل بزننین برای مشاوره یا هرکاری که از دستم بر میاد.

(1/n) The first preprint from our lab is now out in @NatureGenet! We tried to tackle a key challenge in spatial biology to quantitatively characterizing cellular niches by learning spatial gene programs using NicheCompas led by @SebastianBirk_. Paper: shorturl.at/b4Hjk

(1/8) IMPA is published now in @NatureComms. (a) It can generate phenotypic cell painting/microscopy data images under unseen drug and genetic perturbations. (b) It learns a perturbation map of treatment similarities (small molecules together with genetic) and (c) it corrects batch effects in microscopy data. This was @ale__palmaa’s master’s thesis, which I supervised with @fabian_theis. link to the paper: shorturl.at/USp57

Job opportunity! 🚨 Our lab, together with @Muzz_Haniffa's team at @sangerinstitute, is hiring an Advanced Research Assistant/Technical Specialist. We're looking for someone passionate about organoid modeling, CRISPR screening, and spatial technologies to help create accurate in vitro models. These efforts will contribute to training large-scale AI models, supported by @OpenTargets. This role also includes opportunities to develop computational and machine learning skills. Feel free to DM me with any questions. Apply here: sanger.wd103.myworkdayjobs.c… ⏰ closing date: 10.01.2025

Our lab, in collaboration with partners from @genentech, @sanofi, @gsk, @pfizer, @sangerinstitute, and @emblebi, has been awarded £2M by @OpenTargets to generate novel perturbation data across multiple disease models and develop large generative models to facilitate the discovery of drug targets. As part of the first wave of hires, I am looking for candidates for two machine learning-focused positions at different levels (Predoc, Postdoc) and one computational biologist. The positions available are: 1. Machine Learning Scientist (Phd required, Senior Postdoc): tinyurl.com/mph5k538 2. Machine Learning Scientist (Postdoc, Predoc (Msc)): tinyurl.com/y56ct92n 3. Computational Biologist and Applied ML (Postdoc): tinyurl.com/468n53rz deadline 3.07.24