Bioinformatician (Metagenomics) at MDU-PHL. RNA-seq and Microbiome. Jakartan🇮🇩 in Melbourne🇦🇺
Melbourne, Victoria
Joined March 2012
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Muhamad Fachrul, PhD retweeted
Ancestral and environmental diversity shape the immune landscape in Indonesia biorxiv.org/content/10.64898… #biorxiv_genomic
Had a fantastic time in Carlsbad for CZI's Single-Cell Biology Annual Meeting, jam-packed with stellar science and wonderful people. As an ECR, it was especially great to connect with experts in the field and meet fellow Next-Gen Researcher awardees. Thank you @cziscience!!
My thesis submission felt like a rather underwhelming end to my PhD, so it was nice to officially celebrate being #PhDone last week! #UnimelbAlumni
Been a while since I updated here. Highlights:
- Finished my PhD and got my degree March this year (@minouye271 @asalim_hint 🙏)
- Joined @ee_reh_neh's lab as a postdoc (soon moving to @SVIResearch)
- My 2nd manuscript is out now! nature.com/articles/s42003-0…
github.com/fachrulm/RGStraP
Thread of the preprint below:
We've also performed validation on the Geuvadis dataset in the published version of the paper, demonstrating RGStraP's utility in capturing genetic structure across populations
xitter.cf/F_Azr/status/157140017…
My 2nd preprint is up!
We demonstrated a straightforward technique of capturing 🧬 structure solely from RNAseq data, which can then be used to control for population stratification in downstream analyses
@minouye271
biorxiv.org/content/10.1101/…
Small thread below! #RGStraP (1/9)
Muhamad Fachrul, PhD retweeted
🎉 New paper! 🎉
How to estimate the carbon footprint of computations, in practice? With @minouye271, we discuss the different options in this Comment just out in @MethodsPrimers
Full text: rdcu.be/c5KPJ
And a lot of resources on green-algorithms.org 🌱
Hope everyone had a good break. Just realized that the first paper from my PhD is finally published! 😅🎉
nature.com/articles/s41598-0…
Huge thanks to my supervisors and co-authors for the guidance and push 🙏
@phylogeo @SJPamp @minouye271 @asalim_hint
My 2nd preprint is up!
We demonstrated a straightforward technique of capturing 🧬 structure solely from RNAseq data, which can then be used to control for population stratification in downstream analyses
@minouye271
biorxiv.org/content/10.1101/…
Small thread below! #RGStraP (1/9)
In conclusion, our paper (biorxiv.org/content/10.1101/…) demonstrates population structure can be directly inferred and controlled using RNAseq data, facilitating improved retrospective and future analyses of transcriptomic data.
(8/9)
We'd like to acknowledge support from @CamBakerSGI, @UniMelbMDHS, @BakerResearchAu, and STRATAA study group for making this research possible!
(9/9)
Muhamad Fachrul, PhD retweeted
Pleased to announce our latest work is now live at Nature Metabolism (@natmetabolism), in which we show polygenic risk scores (PRS) can be used to identify novel and causal proteins underlying disease risk.
nature.com/articles/s42255-0…
Thread 1/9
