@DGI_db

The Drug-Gene Interaction Database (DGIdb) is an open access, open source database that provides information on drug-gene interactions and gene druggability.

 St Louis, MO
dgidb.org
Joined October 2017
  • Tweets19
  • Following20
  • Followers92
Our latest major update is now officially live and described in our preprint!
bioRxiv@biorxivpreprint20 Sep 2020
Integration of the Drug-Gene Interaction Database (DGIdb) with open crowdsource efforts biorxiv.org/cgi/content/shor… #bioRxiv
3
3
Help the DGIdb development team understand how we can better promote hypothesis generation and interaction data sets for the biomedical and clinical research community. Take 5 minutes to share how you use DGIdb and what we can improve for your research: forms.gle/ohrk49dmHMPXzY1K8

DGIdb Feature Sets Evaluation

Below is a list of proposed features currently under consideration for inclusion in the next major release of DGIdb. Each feature is grouped by category and includes a brief description. We ask that...

docs.google.com
2
1
116
DGIdb is currently planning new feature sets for our next development cycle! Features under consideration include the expansion of regulatory and pathways datasets, and more avenues for community engagement. Provide your feedback here: forms.gle/ohrk49dmHMPXzY1K8

DGIdb Feature Sets Evaluation

Below is a list of proposed features currently under consideration for inclusion in the next major release of DGIdb. Each feature is grouped by category and includes a brief description. We ask that...

docs.google.com
1
1
1
112
Super excited to announce the preprint for @CIViCdb 1.5 update paper. "Evolution of the open-access CIViC knowledgebase is driven by the needs of the cancer variant interpretation community" biorxiv.org/content/10.1101/…

Evolution of the open-access CIViC knowledgebase is driven by the needs of the cancer variant...

CIViC (Clinical Interpretation of Variants in Cancer; [civicdb.org][1]) is a crowd-sourced, public domain knowledgebase composed of literature-derived evidence characterizing the clinical utility of...

biorxiv.org
1
14
26
Elaine Mardis: More shoutouts to @treehousecancer and @DGI_db for interpretation of RNAseq data and identification of potentially druggable targets.
1
3
1
6
Our 4.0 paper has been published online for the Database Issue of Nucleic Acids Research! academic.oup.com/nar/advance…

Integration of the Drug–Gene Interaction Database (DGIdb 4.0) with open crowdsource efforts

Abstract. The Drug-Gene Interaction Database (DGIdb, www.dgidb.org) is a web resource that provides information on drug-gene interactions and druggable gen

academic.oup.com
1
1
2
Replying to @nevillesanjana @ZDaniloski @virusninja @nygenome @IcahnMountSinai @nyuniversity
Very cool to see that @DGI_db played even a small role in this impressive study. Our latest release was just posted on @biorxivpreprint. biorxiv.org/content/10.1101/…

Integration of the Drug-Gene Interaction Database (DGIdb) with open crowdsource efforts

The Drug-Gene Interaction Database (DGIdb, [www.dgidb.org][1]) is a web resource that provides information on drug-gene interactions and druggable genes from various sources including publications,...

biorxiv.org
1
2
7
The new Drug-Gene Interaction Database @DGIdb is live! Integration with crowd-sourced curation and data in network format available via @NDExProject : bit.ly/3kCjGHT Congrats to the whole team! @obigriffith @malachigriffith @HandlerWagner @DGI_db #nciitcr
4
12
Major update just released: Integration of the Drug-Gene Interaction Database (@DGI_db v4.0) with open crowdsource efforts. Includes new/updated sources, improved drug normalization, query scores, @NDExProject integration, and more! biorxiv.org/content/10.1101/…
12
39
Shoutout from Elaine Mardis's keynote for the @CG_Consortium annual meeting! It's always exciting to see how our database is being used by others!
Cancer Genomics Consortium (CGC)@CG_Consortium5 Aug 2020
Replying to @CG_Consortium
Elaine Mardis: More shoutouts to @treehousecancer and @DGI_db for interpretation of RNAseq data and identification of potentially druggable targets.
3
6
Following the update of OmniPath we present our new annotations dataset 🥳 omnipathdb.org/annotations?p… Characterize a #protein using data from 36 resources! @HumanProteome @DGI_db @DisGeNET #MatrisomeDB #systemsbiology #omics @sysbiomed
11
13
Replying to @DGI_db
@DGI_db (dgidb.org/) team is embarking on a major update (v4). If your favorite source of drug-gene interactions or druggable gene categories is missing, now would be a good time to let us know! Feature requests welcome, but major UI refactoring is slated for v5. :)
1
1
Funding bill gives $3 billion boost for NIH medical research thehill.com/policy/healthcar… – at Clayton, MO
6
4
Latest review paper with Fei Wang just came out: Everything you need to know about drug knowledge bases and their applications in biomedical informatics research academic.oup.com/bib/advance…
19
20
Our 3.0 paper has been published online at Nucleic Acids Research! academic.oup.com/nar/advance…

DGIdb 3.0: a redesign and expansion of the drug–gene interaction database

Abstract. The drug–gene interaction database (DGIdb, www.dgidb.org) consolidates, organizes and presents drug–gene interactions and gene druggability infor

academic.oup.com
2
1
5
.@UCSC Haussler Lab's Lauren Sanders shares her work combining @treehousecancer + @PNOC_kids + @DGI_db for #DIPG research @CI4CC #ci4cc2017
6
2
We just got our v3.0 preprint out the door, manuscript in review. #DGIdb 3 is bigger, better, faster! dgidb.org xitter.cf/biorxiv_bioinfo/status…
bioRxiv Bioinfo@biorxiv_bioinfo9 Oct 2017
DGIdb 3.0: a redesign and expansion of the drug-gene interaction database biorxiv.org/cgi/content/shor… #biorxiv_bioinfo
8
9
Load more