The CytoData society (CytoDS) builds and maintains an active community around image-based profiling.
Joined March 2018
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Save the date ๐๏ธ
Weโre happy to share that the SBI2 European Meeting will take place in Cambridge, UK, on July 7โ8 ๐ฌ๐ง.
Please follow the conference news and registration opening on their webpage: sbi2.org/premier-european-meโฆ
Big thank you for making CytoData 2025 a success! ๐ฌ๐๐คโจ
CytoData 2025 was a fantastic week of science, data and collaboration. A big thank you to @ChriSchmied , @EuOpenscreen, and all organizers, speakers and participants!
Thanks again to everyone who joined us. Already looking forward to the next edition in 2026 to be hosted in collaboration with @sbi2_org in Boston!
From the hands-on hackathon on the EU-OPENSCREEN Cell Painting data to engaging talks on image-based profiling, large-scale datasets, assay development, advanced image and data analysis, and new 3D and complex cell models, the energy in the room was amazing
The Cytodata Hackathon is already underway! ๐
We look forward to seeing everyone tomorrow at the symposium.
Our sincere thanks to Dr. Christopher Schmied and the rest of the organisers for making this event possible.
#Cytodata2025 #Hackathon #CellPainting #ImageAnalysis
Looking forward to welcoming all participants to the CytoData 2025 Hackathon next week in Berlin! This yearโs challenge centers on analysing a newly generated Cell Painting dataset from EU-OPENSCREEN. A hands-on event for scientific innovation! #Hackathon #CellPainting
The program for #CytoData2025 is finalized!
๐น Keynote & invited speakers: Fabian Theis, Carolina Wรคhlby, Shantanu Singh, Slava Ziegler, Johannes Schรถneberg, Gregory Way
๐น 2 industry + 1 open-source workshop
๐น Talks & posters from abstracts
๐ Check the full program here: cytodata25.eu-openscreen.eu/โฆ
๐๏ธ Registration is still open until 31 October 2025!
๐ cytodata25.eu-openscreen.eu/โฆ
Poster abstract submission for CytoData 2025 Berlin is still open โ deadline Sept 10!
๐๏ธ Sept 10, 2025
๐ Max Delbrรผck Center, Berlin
๐ lnkd.in/duk-rDAv
General registration closes Oct 1.
Hackathon & oral abstracts are closed.
#cytodata2025
๐ข๐ป๐ฒ ๐ช๐ฒ๐ฒ๐ธ ๐๐ฒ๐ณ๐: Abstract submission for oral presentations ๐ฃ๏ธ and hackathon registration ๐งโ๐ป for CytoData 2025 Berlin close July 25!
Submit abstracts or register here: ๐ cytodata25.eu-openscreen.eu/โฆ
#Cytodata2025 #Hackathon #ImageBasedProfiling
Exciting news! We've extended the deadline for oral submissions for Cytodata 2025. You now have until July 25 to submit oral presentations and register for the hackathon. Don't miss this chance! Poster submission closes September 10, and general registration ends October 1
๐ ๐ฅ๐ฒ๐บ๐ถ๐ป๐ฑ๐ฒ๐ฟ ๐
The deadline for abstract submissions for oral presentations at Cytodata 2025 in Berlin is approaching!
๐ ๐ฆ๐๐ฏ๐บ๐ถ๐ ๐๐ผ๐๐ฟ ๐ฎ๐ฏ๐๐๐ฟ๐ฎ๐ฐ๐ ๐ฏ๐ ๐๐๐ป๐ฒ 25!
cytodata25.eu-openscreen.eu/โฆ
#BerlinConference #Imageanalysis #Microscopy
Join us in Berlin for CytoData 2025!
๐ Info & registration: cytodata25.eu-openscreen.eu
๐ฌ Hackathon: Nov 17โ19
๐ข Symposium: Nov 20โ21
Explore advancements in image-based profiling & high-content screening and Tackle real-world challenges using EU-OPENSCREEN data
๐ Call for Proposals: CytoData 2026!๐
We invite North American institutions to submit proposals for the 2026 symposium, whether in-person or hybrid. Nominate your institution by September 1, 2025. Join us in shaping the future of image-based profiling!
docs.google.com/forms/d/e/1Fโฆ
Recent approaches, IMPA [1] and MorphoDiff [2], use generative models to predict cellular responses to chemical and genetic perturbations
[1] nature.com/articles/s41467-0โฆ
[2] openreview.net/forum?id=PstMโฆ
![[1] Predicting cell morphological responses to perturbations using generative modeling (IMPA): Nature Communications (2025) https://www.nature.com/articles/s41467-024-55707-8
IMPA employs a conditional style transfer process to separate perturbation and batch information from basic cellular information and incorporates perturbation details. It demonstrated significant improvement over other batch correction methods on the RxRx1 dataset and showed the ability to generalize to unseen perturbations.](https://pbs.twimg.com/media/GnX_RVKW0AAPWjC.jpg?name=orig)
ALT [1] Predicting cell morphological responses to perturbations using generative modeling (IMPA): Nature Communications (2025) https://www.nature.com/articles/s41467-024-55707-8 IMPA employs a conditional style transfer process to separate perturbation and batch information from basic cellular information and incorporates perturbation details. It demonstrated significant improvement over other batch correction methods on the RxRx1 dataset and showed the ability to generalize to unseen perturbations.
![[2] MorphoDiff: Cellular Morphology Painting with Diffusion Models: ICLR2025 (accepted spotlight presentation) https://openreview.net/forum?id=PstM8YfhvI
MorphoDiff utilizes a diffusion process to generate images while encoding perturbation information in the latent space. It excelled in generating images with high fidelity and demonstrated the ability to generalize to held-out compounds.](https://pbs.twimg.com/media/GnX_o9zXYAAFysp.jpg?name=orig)
ALT [2] MorphoDiff: Cellular Morphology Painting with Diffusion Models: ICLR2025 (accepted spotlight presentation) https://openreview.net/forum?id=PstM8YfhvI MorphoDiff utilizes a diffusion process to generate images while encoding perturbation information in the latent space. It excelled in generating images with high fidelity and demonstrated the ability to generalize to held-out compounds.
IMPA uses a conditional style transfer process to separate perturbation and batch information from basic cellular information and incorporates perturbation details. It demonstrated significant improvement over other batch correction methods and generalised to unseen perturbations
๐ Join theย CytoDataย community on Bluesky and stay connected for the latest updates, insights, and initiatives in image-based profiling.
๐ Follow us here: bsky.app/profile/cytodata.bsโฆ
hashtag#FollowUs hashtag#BioImageAnalysis hashtag#PhenotypicProfiling
๐ What an exciting annual #CytoData2024 event! We kicked things off with a productive hackathon hosted by the Carpenter-Singh team at the @BroadInstitute, where participants dove into microscopy data and explored how to best model this rich data type ๐๐ฌ
๐กWe continued the next day with the colloquium on Morphologicalย Profiling, which was an absolute highlight ๐ Shoutout to all speakers, participants, and our incredible supporters @RecursionPharma, @Ardigen_SA, @calico Labs, and the @DrAnneCarpenter-@shantanuXsingh lab! ๐
