The Ray and Stephanie Lane Computational Biology Department seeks to expand our understanding of complex biological systems. Proud department of @SCSatCMU.
Pittsburgh, PA
Joined September 2014
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Ray and Stephanie Lane Computational Biology Dept. retweeted
📣 Bold science alert! We're thrilled to announce our newest awardees whose projects span neuroscience, bacteriology, & synthetic biology. Join us in celebrating them as we showcase their research projects below!
Meet all of our awardees: bit.ly/HFAwardees. 1/
Ray and Stephanie Lane Computational Biology Dept. retweeted
Excited to share our @NatureMethods paper on pitfalls & opportunities of using #interpretable #AI in comp bio in the #LLM era. Great collab w/ @atalwalkar's lab. Huge kudos to @valeriechen_ & @muyu_wendy_yang! @CMUCompBio @mldcmu @SCSatCMU @CarnegieMellon nature.com/articles/s41592-0…
Ray and Stephanie Lane Computational Biology Dept. retweeted
Excited to share scGHOST, now published @NatureMethods, graph-based #ML identifying #3Dgenome subcompartments in single cells. Kudos to @KyleXiongCMU & @RuochiZhang, who worked so closely on this. Exciting time for single-cell epigenomics & multiomics! nature.com/articles/s41592-0…
Ray and Stephanie Lane Computational Biology Dept. retweeted
Carnegie Mellon University Trustee Ray Lane and his wife, Stephanie, have invested $25 million in support of the university’s boundary-breaking Computational Biology Department.
cmu.is/Lane-gift-computation…
Ray and Stephanie Lane Computational Biology Dept. retweeted
The final version of our #ISMB2023 Proceedings paper UNADON, a transformer-based model to predict chromosome spatial positioning relative to nuclear bodies, is now online. @muyu_wendy_yang will present her work in Lyon during #ISMB2023. academic.oup.com/bioinformat…
We introduce UNADON, a transformer-based model for predicting large-scale chromatin spatial localization in the nucleus by considering extensive sequence context. Fantastic work by @muyu_wendy_yang. To appear in #ISMB2023. arxiv.org/abs/2304.13230
Ray and Stephanie Lane Computational Biology Dept. retweeted
We introduce scGHOST for revealing #singlecell #3Dgenome subcompartments. Hope this will be a valuable addition to the scHi-C analysis toolbox. Great work from @KyleXiongCMU @RuochiZhang. @4DNucleome
scGHOST: Identifying single-cell 3D genome subcompartments biorxiv.org/cgi/content/shor… #bioRxiv
Ray and Stephanie Lane Computational Biology Dept. retweeted
🥳We have a new preprint out on the very difficult problem of understanding rates of evolution in systems with messy, complex spatial structure.
biorxiv.org/content/10.1101/…
Beyond the limit of single mutational dynamics, how does the topology of a system shape its evolution?
Ray and Stephanie Lane Computational Biology Dept. retweeted
We introduce UNADON, a transformer-based model for predicting large-scale chromatin spatial localization in the nucleus by considering extensive sequence context. Fantastic work by @muyu_wendy_yang. To appear in #ISMB2023. arxiv.org/abs/2304.13230
Ray and Stephanie Lane Computational Biology Dept. retweeted
Excited to share that I will join @CMUCompBio as a tenure-track assistant professor in fall 2023! I am thrilled about starting this new chapter with my amazing new colleagues. I will work on #GWAS #scRNAseq #eQTL #machinelearning, #AIforScience
Ray and Stephanie Lane Computational Biology Dept. retweeted
Congrats to Monica Dayao on being awarded the NIH NLM F31 Predoctoral Fellowship! Advised by Dr. Ziv Bar-Joseph, she'll use machine learning to model spatial proteomics data for building a comprehensive 3D molecular map of the human body for a better understanding of diseases.
Ray and Stephanie Lane Computational Biology Dept. retweeted
With the help of a Summer Undergraduate Research Fellowship and the mentorship of @apfenning, @CMUCompBio and @CMU_Bio major Ruby Redlich uses computational models to investigate the genetics behind animals' sleeping patterns.
cmu.edu/mcs/news-events/2022…
Ray and Stephanie Lane Computational Biology Dept. retweeted
Fast-Higashi is featured on the cover of @CellSystemsCP. Diverse cell types (marbles) can be characterized by single-cell 3D chromatin structures. Fast-Higashi identifies latent correlation of different cells (connections among marbles). cell.com/cell-systems/fullte…
Ray and Stephanie Lane Computational Biology Dept. retweeted
📣 Big job announcement: @CarnegieMellon is searching for 3 (!) faculty in the areas of Cellular Biophysics and Quantitative Biology, a cluster hire to join @Physics_CMU, @CMU_Bio, and @CMUCompBio. Please spread the word!
apply.interfolio.com/113740
Let me explain a a bit more:
ALT Job announcement in Biophysics at Carnegie Mellon
Ray and Stephanie Lane Computational Biology Dept. retweeted
New to the @CMUCompBio faculty this fall is Jose Lugo-Martinez! His work centers around automated science, and he's serving as the co-director of the M.S. in Automated Science Program.
youtu.be/V88xYRsIc8k
Ray and Stephanie Lane Computational Biology Dept. retweeted
From the Bar-Joseph/Kaminski collaborative: CINS (Cell Interaction Network inference from Single-cell expression data) that combines Bayesian network learning with constrained regression analysis.
Method & examples (IPF, COVID19, Aging) #FundedByNHLBI journals.plos.org/ploscompbi…
Ray and Stephanie Lane Computational Biology Dept. retweeted
Join us for #UKCBCB later this month to hear from experts in the field of #bioimaging and #AI.
Alongside Jean-Marie Burel of @openmicroscopy will be Yang Zhang (@CMUCompBio), Josh Moore (@notjustmoore) and Matthew Hartley from @emblebi.
Register now: okt.to/G7Nzhr
Ray and Stephanie Lane Computational Biology Dept. retweeted
📢 Come join us! Tenure-track faculty opening in Computational Biology at Carnegie Mellon @CMUCompBio. We have two rounds of deadlines (please apply by Oct 2 or Dec 8 2022). @SCSatCMU has a vibrant environment & amazing students. Reach out for questions. cbd.cmu.edu/join-us/tenure-t…
Ray and Stephanie Lane Computational Biology Dept. retweeted
From @jmuiuc's lab at @CMUCompBio: the Nucleome Browser is a data visualization and exploration platform allowing researchers and scientists to integrate and interact with multimodal data types, including genomic and imaging datasets.
bit.ly/3Q5QYi6
Ray and Stephanie Lane Computational Biology Dept. retweeted
Kathryn Roeder @CMU_Stats participated in a multi-institutional study that identified 187 genes linked to #autism. Their work is published in @NatureGenet bit.ly/3dIPMU9
ALT Kathryn Roeder is a woman in front of a gray backdrop. She has short brown hair, wearing a pink floral scarf, black top, and gray jacket.
ALT A graphic containing a crowd of black and white outlines, all of the same size, with one of the outlines filled with different colored puzzle pieces.
Ray and Stephanie Lane Computational Biology Dept. retweeted
The School of Computer Science at Carnegie Mellon is hiring teaching track faculty. This includes the Computational Biology Department.
More info at the following link:
apply.interfolio.com/109399