@singlecellomics

Connecting researchers using & developing single cell technologies. Providing a collaborative platform, organizing workshops & hackathons, exchanging expertise.

 Deutschland
linktr.ee/singlecellomics
Joined July 2018
  • Tweets2.1K
  • Following589
  • Followers4.6K
231Media
Single Cell Omics Germany (SCOG) retweeted
MDC-BIMSB@BIMSB_MDC22 Feb 2024
Save the date for the 17th Berlin Summer Meeting: AI’s Adventures in Genomics, 6-7 June 2024! Speakers include Vikram Agarwal @vagar112, @BurkholzRebekka, Julien Gagneur @gagneurlab, Andreas Keller @CCB_CBI, Georg Seelig @seeliglab, @ewa_szczurek & Josh Welch @LabWelch #mdcBerlin
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Karin Hrovatin@KHrovatin6 Nov 2023
1/5 Integration of scRNA-seq data is key for cross-dataset comparison. Yet, substantial batch effects can't be sufficiently removed without losing too much biological information. We show how to improve the integration of substantial batch effects tinyurl.com/3efh585v
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Fabian Theis
@fabian_theis11 Oct 2023
Want to annotate cells across whole organism? Led by @felix_f0097 with Villani lab, we propose scTab, a DL model for tabular single cell expr & show strong scaling behavior beyond linear. Comes with large benchmark useful for evaluating foundation models. biorxiv.org/content/10.1101/…
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The German Human Genome-Phenome Archive@GHGA_DE5 Oct 2023
It's a wrap! Our two day annual meeting has come to an end. As everyone is heading home, we would like to thank all the speakers, our SAB, and the team for an enganging and productive meeting. Until next time! 👋 #GHGAtalks
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Single Cell Omics Germany (SCOG) retweeted
Helmholtz Munich | @HelmholtzMunich
@HelmholtzMunich10 Oct 2023
#AI accelerates & enables #therapies! 👉Learn how Prof. @fabian_theis & team at #HelmholtzMunich & @TU_Muenchen transform info of #BigData into medical #applications: 🔗Einzelzell-Atlas der Lunge: t1p.de/j5ogs 🔗Passionate about AI in #Health: t1p.de/jdg1v
Wissenschafts- und Kunstministerium Bayern
@StMWK_Bayern9 Oct 2023
Wie verändern sich #Zellen und wie entstehen dadurch #Krankheiten? 🤔 Prof. Dr. Fabian Theis und sein Team nutzen #künstlicheIntelligenz zur #Analyse großer biomedizinischer #Datensätze, um dieser Frage nachzugehen. #BigData #Daten @TU_Muenchen @HelmholtzMunich @fabian_theis
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Single Cell Omics Germany (SCOG) retweeted
Mo Lotfollahi
@mo_lotfollahi9 Oct 2023
(1/n)scPoli is now published in @naturemethods shorturl.at/jvyL0; see below. scPoli is an open-world learner for multi-scale analysis of scRNAseq/ATAC-seq across samples and species with cell types and conditions hierarchies. With scPoli you can:
Mo Lotfollahi
@mo_lotfollahi29 Nov 2022
1/n Excited to share our new work with @fabian_theis on population-level integration of single-cell data led by amazing Carlo De Donno. We present scPoli to learn representation for cell types and samples that can be updated with new cells and samples (tinyurl.com/ywkw5nnw)
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Gray Camp@GrayCampLab6 Oct 2023
36 datasets, 26 protocols, 1.7 million harmonized cells! First edition Human Neural Organoid Cell Atlas. Important work from @zhisong_he @josch_f Leander Dony @TreutleinLab @fabian_theis. Strong community effort @Sergiu_P_Pasca @GiorgiaQuadrato. #organoids @ETH_BSSE @IHB_Research
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Saez-Rodriguez Group@saezlab6 Oct 2023
📢LIANA+, our all-in-one cell-cell communication framework for multi-condition single-cell and spatial data, is now part of the @scverse_team. In the same spirit, we are open to suggestions, requests and contributions👩‍💻👨‍💻liana-py.readthedocs.io Here's a list of tutorials 👇
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Nature Biotechnology
@NatureBiotech21 Sep 2023
Supervised discovery of interpretable gene programs from single-cell data go.nature.com/460weRo
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Mo Lotfollahi
@mo_lotfollahi25 Sep 2023
GET: a foundation model of transcription across human cell types Scalable training across single-cell ATAC and RNA+ATAC datasets biorxiv.org/cgi/content/shor…
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Single Cell Omics Germany (SCOG) retweeted
Nature Methods@naturemethods21 Sep 2023
A workflow developed by @N_Rajewsky, @ILegnini and colleagues combines optogenetic perturbations and spatial transcriptomics to enable insights into cell fates and spatiotemporal gene patterns in organoids. OA paper: nature.com/articles/s41592-0…
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Fabian Theis
@fabian_theis21 Sep 2023
Excited that veloVI is out @naturemethods! Led by @adamgayoso & @PhilippWeiler7 w awesome @YosefLab, we combine deep generative modeling with a mechanistic single-cell transcriptional model for better RNA velocity analysis with uncertainty quantification. nature.com/articles/s41592-0…
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#singlecelljob in Barcelona
Holger Heyn
@hoheyn21 Sep 2023
PLEASE consider joining our #singlecell #spatial genomics group @cnag_eu in beautiful Barcelona! #lifeisbetteratthebeach Senior Laboratory Technician cnag.cat/jobs/single-cell-ge… Postdoctoral Computational Biologist cnag.cat/jobs/single-cell-ge… Please RT.
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Single Cell Omics Germany (SCOG) retweeted
Eric Topol
@EricTopol18 Sep 2023
The latest on human total body cell count and cell size derived from >1,500 sources @PNASNews Men ~36 trillion cells Women ~28 trillion cells an inverse relationship between cell size and count pnas.org/doi/10.1073/pnas.23…
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biohub
@biohub19 Sep 2023
We are planning to build a high-performance computing cluster with 1000+ GPUs to accelerate AI for biomedical science, including advancing the development of new virtual cell 👇🪡czi.co/3Ps2vtE

New AI Cluster Will Create Predictive Models of Cells

CZ Science to build one of the largest computing systems for nonprofit life science research in the world

chanzuckerberg.com
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Single Cell Omics Germany (SCOG) retweeted
The Knoblich Lab@Knoblich_lab13 Sep 2023
We are thrilled to share our latest work, a collaborative effort with @TreutleinLab, in Nature (nature.com/articles/s41586-0…). We introduce CHOOSE, a powerful screening system within cerebral organoids, through which we identified developmental defects associated with autism. 🧵1/7

Single-cell brain organoid screening identifies developmental defects in autism

Nature - We develop a high-throughput CRISPR screening system in cerebral organoids and identify vulnerable cell types and gene regulatory networks associated with autism spectrum disorder from...

nature.com
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Single Cell Omics Germany (SCOG) retweeted
Matthias Mann Lab@labs_mann13 Sep 2023
Our journey of multiplexed DIA, encompassing applications in spatial #singlecell #proteomics, is showcased on the cover of the latest issue of @MolSystBiol. We are excited about the prospects of sensitivity, reproducibility and high-throughput applications in clinical proteomics.
Mol Syst Biol@MolSystBiol12 Sep 2023
09/2023 Issue ➡️ embopress.org/toc/17444292/2… #multiomics in gut microbial communities, predicting fermentation function in wine yeast consortia from community composition... Cover: automated multiplexed DIA workflow for bulk or #singlecell #proteomics @labs_mann #SystemsBiology
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Karin Hrovatin@KHrovatin11 Sep 2023
To ease understanding of diabetes, which is complicated by bio and technical factors affecting the regulators of blood glucose – the pancreatic islets, we created a comprehensive mouse islet atlas (MIA) by integrating multiple single-cell transcriptomic (scRNA-seq) datasets.
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Single Cell Omics Germany (SCOG) retweeted
MDC-BIMSB@BIMSB_MDC7 Sep 2023
We thank the speakers, organizers and ca. 200 participants of the 16th Berlin Summer Meeting 'The MDC Celebrates 15 Years of BIMSB', 6-7 Sept 2023, for 2 days of superb presentations & discussions on the latest exciting findings in systems biology! @MDC_Berlin #mdcBIMSB2023
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📢 Starting now! Don't miss Céline's lecture "Mechanisms of cell plasticity in breast cancer". @VallotCeline, @institut_curie, #SCOGVLS ✏️ Register: bit.ly/scogvls
Single Cell Omics Germany (SCOG)@singlecellomics5 Sep 2023
📢 Join SCOG Virtual Lecture #55 - TOMORROW ⏰ September 6, 4:00-4:45pm CEST 💬 Céline Vallot (@VallotCeline, @institut_curie) 💡"Mechanisms of cell plasticity in breast cancer" ✏️ Registration: bit.ly/scogvls #SCOGVLS @fabian_theis
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