SilcsBio (@silcsbio) header
SilcsBio (@silcsbio) profile picture

SilcsBio

@silcsbio

SilcsBio provides software and services for unlocking the full potential of computer-driven drug design.

 Baltimore, MD
silcsbio.com
Joined April 2018
  • Tweets255
  • Following290
  • Followers410
123Media
Photo by SilcsBio (@silcsbio)Photo by SilcsBio (@silcsbio)Photo by SilcsBio (@silcsbio)Photo by SilcsBio (@silcsbio)Photo by SilcsBio (@silcsbio)Photo by SilcsBio (@silcsbio)Photo by SilcsBio (@silcsbio)Photo by SilcsBio (@silcsbio)Photo by SilcsBio (@silcsbio)Photo by SilcsBio (@silcsbio)
Harnessing computational technologies to facilitate antibody–drug conjugate development #machinelearning #compchem nature.com/articles/s41589-0…
Harnessing computational technologies to facilitate antibody–drug conjugate development

Harnessing computational technologies to facilitate antibody–drug conjugate development

Nature Chemical Biology - The development of antibody–drug conjugates remains a challenge in part due to the lack of three-dimensional structural information that must account for the...

nature.com
8
28
1,670
Beyond on overview of physics and ML-based methods applied to antibody-drug conjugates (ADCs) the paper presents calculations showing how MD simulations and the SILCS technology may be used to facilitate ADC development using utilities available from @silcsbio
Nature Chemical Biology (@nchembio) profile pictureNature Chemical Biology@nchembio27 Jun 2025
A new Perspective by Anastasia Croitoru, Asuka Orr, and @alex_mackerell discusses how computational methods can be used to facilitate the early-stage development and optimization of antibody-drug conjugates nature.com/articles/s41589-0…
3
13
799
Awesome #BPS2024 poster presentation by Kyle Rouen at our lab @UCD_Physiology and @UCD_BPH on our collaborative work with @alex_mackerell, @clancyatheart and @vyy_sf on using SILCS @silcsbio software to predict drug cardiac arrhythmia risks.
Image from Igor Vorobyov (@VorobyovUCD)
2
15
726
News: Our portfolio company and @silcsbio spinout, Rasio Therapeutics, Raises $1.5 Million to Advance #DrugDevelopment. Read more: bit.ly/3daYozs @NFCR #Oncology #DrugDiscovery #DrugDesign #Research
2
4
[ASAP] Functional Group Distributions, Partition Coefficients, and Resistance Factors in Lipid Bilayers Using Site Identification by Ligand Competitive Saturation ift.tt/3aP6Ovt
Functional Group Distributions, Partition Coefficients, and Resistance Factors in Lipid Bilayers...

Functional Group Distributions, Partition Coefficients, and Resistance Factors in Lipid Bilayers...

Abstract. Small molecules such as metabolites and drugs must pass through the membrane of the cell, a barrier primarily comprising phospholipid bilayers an

pubs.acs.org
2
3
BellBrook is excited to announce our NCI grant for TREX1 antagonist discovery. #drugdiscovery bellbrooklabs.com/grant-stim…
Image from BellBrook Labs (@BellBrookLabs)
2
3
We've just submitted a manuscript on an extension of the #CHARMM additive force field combined with #CGenFF to 333 non-standard amino acids. Collaboration with Alexey Aleksandrov and @CharmmGui That should help with the FF side of things.
Seth Axen 🪓 (@sethaxen) profile pictureSeth Axen 🪓@sethaxen19 Mar 2021
What's the state of the art these days for constructing rotamer libraries for nonstandard amino acids? I used to use a method based on doi.org/10.1039/c0cp01865a, but it was very hands-on, involving fitting forcefield terms. Anything both accurate and mostly automated?
2
12
56
Congratulations to @shaelynnlahey and @zeldery2 for their new paper on simulating nasty torsion PESs. The ANI neural network potentials perform very well and can be to simulate small molecule ligands in situ. #openff is off to a great start too. pubs.acs.org/doi/pdf/10.1021…
Image from Christopher Rowley (@RowleyGroup)
1
8
1
44
Our portfolio company Rasio Therapeutics, associated with recent @NFCR scientist Curt Civin of @UMmedschool and with proprietary @silcsbio software, has identified several lead hits for multiple immuno-oncology targets. aim-hiaccelerator.org/rasio-… #JPM2021
Image from AIM-HI Accelerator Fund (@aimhifund)
2
1
5
Happy to see the success of #SEED in conjunction with #CGenFF and #CHARMM in identifying fragment binding sites on a number of proteins.
JCIM & JCTC Journals (@JCIM_JCTC) profile pictureJCIM & JCTC Journals@JCIM_JCTC25 Sep 2020
Assessment of the Fragment #Docking Program #SEED pubs.acs.org/doi/10.1021/acs… @hermanvvlijmen @amedeocaflisch @hans_silicos_it #ASAP
Image from JCIM & JCTC Journals (@JCIM_JCTC)
7
26
Spoke about SILCS at drug design hackathon organized by MHRD in India : youtu.be/M-lX3Dd-z9g
1
5
2
13
SilcsBio retweeted
SilcsBio (@silcsbio) profile picture
SilcsBio@silcsbio18 Jun 2020
Find out how SilcsBio's services can support you in modeling protein-ligand interactions. Get in touch to arrange a call. #drugdesign #cadd #SILCS
Image from SilcsBio (@silcsbio)
1
4
Thank you to John Zhang and @PCCP for highlighting our article on the impact of polarizability on functional group-protein interactions using the Drude FF and the SILCS method. 10.1039/D0CP00088D blogs.rsc.org/cp/2020/07/17/…
4
10
Replying to @silcsbio
@Silcsbio is providing the design support for @GEn1ELifesci development of agents to treat ARDS. #silcs
GEn1E Lifesciences (@gen1elifesci) profile pictureGEn1E Lifesciences@gen1elifesci28 May 2020
Thanks @CNN and @Shannon_Liao for including us in your story. Thanks @snowmaker and @ycombinator for your consistent support to accelerate therapeutic treatment for ARDS from COVID-19 #ARDS #COVID19treatment #COVIDtherapeutics
1
2
#SILCS approach to identification of fragment and drug-like molecule binding sites (SILCS-Hotspots) out in BBA. Importance of consideration of adjacent Hotspots versus just the most favorable is shown. #silcsbio doi.org/10.1016/j.bbagen.202…
1
7
SILCS FragMap patterns from unglycosylated/glycosylated protein (left/right). Some interesting local changes. See quite a bit of water (purple) recruitment around the glycan.
Image from Sunhwan Jo (@sunhwan)
3
11
#Sygnature and #SilcsBio team up pharmatimes.com/news/sygnatu… @PharmaTimes @SygnatureDiscov @silcsbio #software #SILCS #SSFEP
1
Sygnature Discovery announces collaboration with software firm @silcsbio | #SILCS #compchem #drugdiscovery #enablingsuccess sygnaturediscovery.com/news-…
Image from Sygnature Discovery (@SygnatureDiscov)
5
5
#BPS19 day 2: DNA Structure, Dynamics, & Function Platform. Enjoyed talks & posters from awesome #CompChem labs like @Biochem_Anne, @alex_mackerell, & @agrossfield. Capped off by dinner with #LemkulLab. 🤓👩‍💻👨‍💻
Image from Alexa Salsbury (@asalsbur)
5
1
18
This week on #MitoMonday we highlight the inspirational work and life of the great Gertrude “Trudy” Belle Elion. Who revolutionized drug development and won a @NobelPrize without earning a PhD degree! @WomenScienceDay #womeninscienceday #WomenInScience #LateNightWIthTheRutterLab
Image from Rutter Lab (@RutterLab)
Image from Rutter Lab (@RutterLab)
1
29
6
78
Load more