#oceanography #plankton #datascience #machinelearning #deeplearning @HatfieldMSC @OSUPlanktonLab @OregonState
Newport, OR
Joined February 2015
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NEW Disentangling plankton community structure on the OR and CA coast using gene sequencing and plankton imaging #DeepLearning #BigData
@OSUPlanktonLab @HatfieldMSC @OSUIB @OSUCEOAS @OSUScience @MSI_OregonState @SutherlandLab @bluewaterlab @FrontMarineSci tinyurl.com/2hwwh5mb
Thanks to many collaborators out there who made this possible! Including Chris Sullivan @CQLSOregonState and @AvenaBriseno @kelsey_swieca. Major funding by @NSF and processing at @ACCESSforCI and formerly XSEDE with @SDSC_UCSD
Neat new paper out with @OSUPlanktonLab
Edge computing at sea: high-throughput classification of in-situ plankton imagery for adaptive sampling
#plankton #EdgeComputing #MachineLearning #oceanography #oceantechnology
frontiersin.org/articles/10.…
Researchgate: beav.es/Twz
ALT Edge sever setup for a research cruise including a WD Ultrastar Edge-MR Ruggedized Edge Server
Through industry collaboration with Bellamare LLC and @westerndigital we show how oceanographic sampling can be improved and made adaptive/dynamic based on real time IDs of plankton including copepods, jellies, and larval fish right on the ship using #AI.
WD wrote a blog article a while ago that you might find informative: blog.westerndigital.com/edge…
Moritz S Schmid retweeted
Future is mixotrophy in world ocean! Read about it
doi.org/10.1093/plankt/fbad0…
New paper with @AdamTGreer & @OSUPlanktonLab on imaging doliolids ("jellyfish") using the ISIIS underwater imager across multiple ecological systems. Great teamwork! @HatfieldMSC @OSUCEOAS @OSUIB @AvenaBriseno @jessicayluo @KellyRobinson0 @OSUScience
Our newest results comparing doliolid distributions from a variety of oceanographic regimes - great to work with this group and leverage all of the plankton images collected over ~10 years to answer a fundamental ecological question! @UGA_MarineSci aslopubs.onlinelibrary.wiley…
Moritz S Schmid retweeted
Congratulations to the Plankton Ecology labs newest doctor, Dr. Megan Wilson!
Moritz S Schmid retweeted
Undergraduate REU intern @MegAlberding spent the summer with the Plankton Ecology lab, analyzing ISIIS data on chaetognath distributions, and joining us in our summer cruise. Yesterday she presented a poster at the @HatfieldMSC summer symposium. Thanks for the fun summer Meg!
Moritz S Schmid retweeted
The Plankton Ecology Lab at Oregon State University has received their new #LISST-200X which they will use with the In-situ Ichthyoplankton Imaging System to investigate plankton size spectra on the Oregon Shelf.
Read more here: bit.ly/3ACPaai
#OceanSci #Plankton
Moritz S Schmid retweeted
Stomatopod (aka mantis shrimp) larva from the South Atlantic Bight - the adults have up to 16 visual pigments (we only have 4). Who knows what this little one sees, but it develops some of the most amazing eyes in the animal world!
Colleagues, we invite you to submit to our @aslo_org #OSM22 session: ME02 The size structure of #aquatic #ecosystems: from theory to applications. Chaired with Maria Grigoratou and @RenatoQuinones. Find the abstract: aslo.org/osm2022/scientific-… @OregonState @GMRI @udeconcepcion
Moritz S Schmid retweeted
Dynamic mesoscale and submesoscale oceanographic features increase foraging opportunities for one of the world's smallest seabirds.
New study by Federico De Pascalis and colleagues: bit.ly/meps_668_121
Check our newest blog for our #citizenscientists @the_zooniverse @PlanktonPortal where we report on on a @NOAA cruise on Bell M. Shimada. Lots of info on the #NorthernCaliforniaCurrent and its #plankton. Funded by @NOAA @NASA @NSF @Belmont_Forum Questions? tinyurl.com/68awd5fs
ALT Jellyfish Mitrocoma cellularia imaged by the In situ Ichthyoplankton Imaging system - underwater imager
After a lot of work, @OSUPlanktonLab is happy to open-source its processing pipeline for classifying billions of #plankton images using #DeepLearning #BigData
dx.doi.org/10.5281/zenodo.46…
Lot's of work went into this, thanks to @AvenaBriseno @jessicayluo et al. @HatfieldMSC @OSUCEOAS
Code is streamlined to set up the pipeline on your local #HPC as well as @NSF's @XSEDEscience. We provide a training library and test data. This is possible through a great collaboration with @CGRBOregonState.
@OregonState @ResearchOSU @MSI_OregonState @OSUScience
Hey @ZENODO_ORG I should have tagged you earlier, but would you mind tweeting this out. The #plankton #imaging community would be very happy, and the product is quite well received on your webpage as well. Thanks!
Moritz S Schmid retweeted
Check out our latest features including a more seamless upload process and better support for software and supplementary information with @zenodo_org: blog.datadryad.org/2021/05/1…
Buddy and lab member Will Fennie is giving his PhD defense just now. Want to learn about larval rockfish? Livestream: youtube.com/watch?v=urFHQgQ6…
