@saabalde

JSPS postdoctoral fellow at the Atmosphere and Ocean Research Institute, U. of Tokyo. Interested in phylogenomics, transcriptomics and comparative genomics.

scholar.google.es/citations?user=6k6mGNcAAAAJ&hl=es
Joined December 2017
  • Tweets1.2K
  • Following447
  • Followers317
73Media
It seems it's already typset. That was quick. doi.org/10.1093/gbe/evag094

Patterns of Conservation and Loss of Hox Genes in Xenacoelomorph Lineage Since Divergence From Last...

Abstract. The explosion of body forms found in bilaterians is thought to be tied to the diversification of Hox transcription factors, which play a critical

academic.oup.com
Samuel Abalde@saabaldeApr 14
New manuscript out, led by @yannbuck, about Xenacoelomorpha's Hox repertoire. This was fun :-) doi.org/10.1093/gbe/evag094

Patterns of Conservation and Loss of Hox Genes in Xenacoelomorph Lineage Since Divergence From Last...

Abstract. The explosion of body forms found in bilaterians is thought to be tied to the diversification of Hox transcription factors, which play a critical

academic.oup.com
4
191
New manuscript out, led by @yannbuck, about Xenacoelomorpha's Hox repertoire. This was fun :-) doi.org/10.1093/gbe/evag094

Patterns of Conservation and Loss of Hox Genes in Xenacoelomorph Lineage Since Divergence From Last...

Abstract. The explosion of body forms found in bilaterians is thought to be tied to the diversification of Hox transcription factors, which play a critical

academic.oup.com
1
2
259
Friendly reminder: next Monday!
@SEGenetica@segenetica1 Aug 2025
🧬 Simposio MUSEUM BIODIVERSITY GENOMICS 🗓️15/Sept 📍@mncn_csic Ponentes internacionales, genómica aplicada a colecciones naturales y nuevas fronteras en biodiversidad. 🗓 Inscripciones hasta el 1/9 👉 eventbrite.co.uk/e/museum-bi… #Genomics #Biodiversity #CSIC #Museums #Science
1
2
3
408
1/ 🧠 La neurocientífica 𝗟𝗶𝘀𝗲𝘁 𝗠𝗲𝗻é𝗻𝗱𝗲𝘇 𝗱𝗲 𝗹𝗮 𝗣𝗿𝗶𝗱𝗮 (@LMPrida) ha sido nombrada directora del nuevo 𝗖𝗲𝗻𝘁𝗿𝗼 𝗱𝗲 𝗡𝗲𝘂𝗿𝗼𝗰𝗶𝗲𝗻𝗰𝗶𝗮𝘀 𝗖𝗮𝗷𝗮𝗹 (𝗖𝗡𝗖) del @CSIC Su misión: lanzar un programa de investigación ambicioso y multidisciplinar.
4
21
1
69
12,001
The #MaxPlanckPostdocProgram offers a guaranteed contract of at least 3 years, targeted mentoring, and career workshops. The call for applications is open now! 🚀 Take advantage of this opportunity and browse the job vacancies. mpg.de/en/max-planck-postdoc…
6
199
2
656
71,353
Samuel Abalde retweeted
@SEGenetica@segenetica1 Aug 2025
🧬 Simposio MUSEUM BIODIVERSITY GENOMICS 🗓️15/Sept 📍@mncn_csic Ponentes internacionales, genómica aplicada a colecciones naturales y nuevas fronteras en biodiversidad. 🗓 Inscripciones hasta el 1/9 👉 eventbrite.co.uk/e/museum-bi… #Genomics #Biodiversity #CSIC #Museums #Science
7
2
8
1,313
Later this month I will visit the Asamushi Research Center for Marine Biology, in Aomori, where I will train undergraduate and graduate students in the use of low-coverage genomic data for studying diversity. I am very excited about this workshop! :-) biology.tohoku.ac.jp/lab-www…
1
92
Genomics Sheds New Light on the Ancestral Bilaterian Opsin Repertoire and Suggests Rhabdomeric Phototransduction in Xenacoelomorpha academic.oup.com/gbe/article… @GenomeBiolEvol

Genomics Sheds New Light on the Ancestral Bilaterian Opsin Repertoire and Suggests Rhabdomeric...

Abstract. Animals use opsins, light-sensing, transmembrane proteins, to detect light, which is then converted into an electrical stimulus in the photorecep

academic.oup.com
10
29
1,608
Samuel Abalde retweeted
PCI Genomics@PCIgenomics7 May 2025
📑 New PCI Genomics recommendation, by @saabalde genomics.peercommunityin.org… On the work of Ole K. Tørresen et al. (2025) Comparison of whole-genome assemblies of European river lamprey (Lampetra fluviatilis) and brook lamprey (Lampetra planeri) biorxiv.org/content/10.1101/…
2
3
128
Help us improve the @erga_biodiv Knowledge Hub! A quick questionnaire (1-2 minutes!) will guide us in adding content that better meets your #biodiversity #genomics needs. We really appreciate your feedback! cognitoforms.com/ERGAEuropea…
1
6
6
882
Circatidal control of gene expression in the deep-sea hot vent shrimp Rimicaris leurokolos doi.org/10.1098/rspb.2024.29…

Circatidal control of gene expression in the deep-sea hot vent shrimp Rimicaris leurokolos

Abstract. Biological clocks are a ubiquitous feature of all life, enabling the use of natural environmental cycles to track time. Although studies on circa

royalsocietypublishing.org
1
96
Finally, the typeset version is out: academic.oup.com/sysbio/adva…
Samuel Abalde@saabalde26 Oct 2024
New paper with @ulfjo out today on Systematic Biology: "A Phylogenomic Backbone for Acoelomorpha Inferred from Transcriptomic Data". doi.org/10.1093/sysbio/syae0…

A Phylogenomic Backbone for Acoelomorpha Inferred From Transcriptomic Data

Abstract. Xenacoelomorpha are mostly microscopic, morphologically simple worms, lacking many structures typical of other bilaterians. Xenacoelomorphs—which

academic.oup.com
3
293
RNAseq is commonly performed. We compared N=30 wild-type Bl6 mice to an N=30 heterozygotic knockout with a phenotype, and then downsized. We found you need at least an N= 8-12 to avoid a >50% false positive rate. A 2nd line confirmed the finding. biorxiv.org/content/10.1101/…

Optimizing murine sample sizes for RNA-seq studies revealed from large-scale comparative analysis

Determining the appropriate sample size (N) for comparative biological experiments is critical for obtaining reliable results. In order to determine the N, the usual approach is to perform a power...

biorxiv.org
22
212
41
769
185,746
New paper with @ulfjo out today on Systematic Biology: "A Phylogenomic Backbone for Acoelomorpha Inferred from Transcriptomic Data". doi.org/10.1093/sysbio/syae0…

A Phylogenomic Backbone for Acoelomorpha Inferred From Transcriptomic Data

Abstract. Xenacoelomorpha are mostly microscopic, morphologically simple worms, lacking many structures typical of other bilaterians. Xenacoelomorphs—which

academic.oup.com
5
1
15
942
Samuel Abalde retweeted
Michael Hiller@hillermich17 Oct 2024
Job Alert. We have 6-year funded positions for a postdoc and bioinformatician to join our @ERC_Research #BATPROTECT project. Topics include genome assembly, annotation, comparative genomics & transcriptomics and more. Pls RT. tbg.senckenberg.de/hillerlab…
2
110
5
228
31,201
Finally our probe set targeting Ultraconserved elements (UCEs) in Decapoda (and other Malacostraca) is out! I am so happy to be part this with Jonas Geburzi @sderkarabetian and @ggiribet check our manuscript here and see more info👇 frontiersin.org/journals/mar…

Frontiers | From the shallows to the depths: a new probe set to target ultraconserved elements for...

Since its introduction about a decade ago, target enrichment sequencing of ultraconserved elements (UCEs) has proven to be an invaluable tool for studies acr...

frontiersin.org
1
9
22
1,371
📢 A fully funded 4y PhD contract at the @mncn @DPE_CSIC Madrid under my supervision, starting in early 2025. DM/Email if interested. Pls retweet 🙏
3
130
4
130
19,989
Samuel Abalde retweeted
Michael Hiller@hillermich12 Jul 2024
#JobAlert. PhD and Postdoc positions in comparative #genomics. Join our #ERC synergy project #BATPROTECT to uncover the mechanisms behind bats' long healthspan & disease resistance. More info tinyurl.com/mwf2tr5c *Please RT.* #ResearchOpportunity #ScienceJobs @LOEWE_TBG
47
3
74
15,197
Samuel Abalde retweeted
Pete Heintzman@PalaeoPete16 May 2024
🚨 Postdoc position 🚨 Excited to be recruiting a postdoc to use sedimentary #ancientDNA 🧬 to better understand climate-associated impacts on an Arctic coastal ecosystem Deadline: 15th June 2024 Based at @CpgSthlm & @Stockholm_Uni Come join us! 😀 su.se/english/about-the-univ…

Available jobs

Do you want to be part of a leading research university? Here you can find current job openings at Stockholm University.

su.se
2
67
4
83
15,244
Samuel Abalde retweeted
Julio Rozas@JRozasUB1 Feb 2024
The 20th edition of the Phylogenomics and Population Genomics course (UB, Barcelona), will take place from July 1 to 12, 2024. Pre-enrolment deadline March 15th, 2024. More info in: ub.edu/certfem/ppgcourse/inf…
2
43
1
76
7,668
Load more