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BioEmu is now published in Science! 🎉
I’m deeply grateful to the incredible highly collaborative team that made this happen.
Can't wait to see how the community uses BioEmu to better understand protein structure ensemble and their implilcations in biology and medicine.
Today in the journal Science: BioEmu from Microsoft Research AI for Science. This generative deep learning method emulates protein equilibrium ensembles – key for understanding protein function at scale. msft.it/6010S7T8n
Ryota Tomioka retweeted
Public preview of BioEmu2! @MSFTResearch AI for Science’s new foundation model for biomolecular structure, dynamics and function. Open weights, MIT license.
github.com/microsoft/bioemu2
Movie: BioEmu2-simulated binding of intrinsically disordered peptide PUMA to MCL-1 receptor. 🧵⬇️
Ryota Tomioka retweeted
Synthesis is a major bottleneck in drug discovery. AI synthesis planning can help propose better routes and make generative molecular design tractable.
With our retroChimera model we have been pushing the boundaries of these models further - out in @Nature today. 1/2
Ryota Tomioka retweeted
Excited to see this out: An ab initio foundation model of wavefunctions that accurately describes chemical bond breaking. Based on deep Quantum Monte Carlo. @MSFTResearch @AdamEFoster @SherryLixueC @PBerntSzab1 @jonkhler @n_gao96 Zeno S, Jan H.
nature.com/articles/s41467-0…
Ryota Tomioka retweeted
RetroChimera is finally out in Nature. Super excited!
nature.com/articles/s41586-0…
Custom-made molecules are advancing medicine, materials, and agriculture, but producing them is slow and expensive. A new Nature paper highlights RetroChimera, a predictive model that helps accelerate chemical synthesis, helping researchers explore a wide range of molecules.: msft.it/6012a5Ogy
Ryota Tomioka retweeted
Join us at @MSFTResearch AI for science and work on exciting Materials Design challenges!
This is a 2-year Machine Learning post-doc position within the team.
Location: Cambridge (UK), Berlin (DE), or Amsterdam (NL).
Link in comments below 👇
Our team at @MSFTResearch is looking for a 2y ML post-doc to re-think materials design using AI. This is an exceptional opportunity to join our ambitious mission of solving some of the most pressing challenges that exist today.
#ai4science #materials
⬇️See link below ⬇️
Ryota Tomioka retweeted
Excited to announce major #MatterSim updates!
👩🔬 Experimentally synthesized high thermal conductor identified by MatterSim
⚡️ 3-5x inference speed-up
💪 MatterSim-MT: a new multi-task foundation model for in silico materials characterization
⬇️ Details below (1/6)
Ryota Tomioka retweeted
MatterSim now faster than ever, and with LAMMPS support for your multi-GPU simulations
Replying to @rpinsler
⚡️ Faster simulation: We have accelerated MatterSim-v1 model inference by 3-5x and integrated it with the LAMMPS software package, enabling large-scale simulations across multiple GPUs.
(4/6)
Do you want to work on ambitious collaborative research at MSR Cambridge, UK? We are looking for a two-year postdoc role in machine intelligence team at MSR Cambridge. Come work with fantastic colleagues on topics spanning foundational ML research. Apply:
apply.careers.microsoft.com/…
Ryota Tomioka retweeted
I study authoritarianism for a living, so I do not say this lightly: America isn't facing an authoritarian future. America is living an authoritarian present.
(A long 🧵)
/1
Ryota Tomioka retweeted
We show that our tuned LM can outperform frontier models (incl. retrieval) on the task, and retains high steerability via prompting. arxiv.org/abs/2512.13668 - work lead by the legendary @fiberleif !
Ryota Tomioka retweeted
Excited to share our latest development, QFANG: A Scientific Reasoning Model for Organic Synthesis Procedure Generation. Check it out 👉arxiv.org/abs/2512.13668
#MicrosoftResearch #AIforScience #Chemistry #ReasoningModel #LLM
Ryota Tomioka retweeted
MLFFs 🤝 Polymers — SimPoly works!
Our team at @MSFTResearch AI for Science is proud to present SimPoly (SIM-puh-lee) — a deep learning solution for polymer simulation.
Polymeric materials are foundational to modern life—found in everything from the clothes we wear and the food we consume to high-performance materials in aerospace, electronics, and medicine. Today, we introduce a new way to simulate them.
We built a machine learning force field (MLFF) to predict macroscopic properties across a broad range of polymers—trained only on quantum-chemical data, with no experimental fitting. Specifically, we accurately compute polymer densities via large-scale MD simulations, achieving higher accuracy than classical force fields. We also capture second-order phase transitions, enabling prediction of glass transition temperatures. These two properties are fundamental to processing and application design. Finally, we created a benchmark based on experimental data for 130 polymers plus an accompanying quantum-chemical dataset—laying the foundation for a fully in silico design pipeline for next-generation polymeric materials.
The incredible team: Jean Helie, @temporaer, Yicheng Chen, Guillem Simeon, @a_kzna, @ErnestoCheco, @erunzzz, Gabriele Tocci, @chc273, @yatao_li, @SherryLixueC, @zunwang_msr, Bichlien H. Nguyen, Jake A. Smith, and Lixin Sun.
📄 Preprint: arxiv.org/abs/2510.13696
⚙️ Data and code release: in progress⏳
#MLFFs #Polymers #AIforScience #DeepLearning #SimPoly #ScientificML #Microsoft #MicrosoftResearch #MicrosoftQuantum
Ryota Tomioka retweeted
🚨We are hiring! 🚨 Want to join a highly talented, collaborative team and build the next frontier model for materials design? Apply to the following roles and join our materials team at @MSFTResearch AI for Science. Location can be Cambridge UK or Amsterdam NL or Berlin DE.
Senior Researcher in Deep Learning: jobs.careers.microsoft.com/g…
Senior Applied Scientist: jobs.careers.microsoft.com/g…
Senior Research Engineer on Data: jobs.careers.microsoft.com/g…
Senior Research Software Development Engineer(w/ our engineering team): jobs.careers.microsoft.com/g…
Microsoft researchers introduce MatterGen, a model that can discover new materials tailored to specific needs—like efficient solar cells or CO2 recycling—advancing progress beyond trial-and-error experiments. msft.it/6012U8zX8
Ryota Tomioka retweeted
Our deep learned exchange-correlation functional Skala is finally available to try out 🎉
Tell us what works and where skala can be improved!
The wait is over! Microsoft Research is sharing Skala, the new exchange-correlation functional, marking a major milestone in the accuracy/cost trade-off in DFT. Help us learn from your testing so we can improve. Available on Azure AI Foundry and GitHub. msft.it/6016sFDLY
Ryota Tomioka retweeted
Skala is now available to everyone!
Why are we releasing it? Because we’re not just aiming to publish a cool paper — we’re on a mission to bring DFT to chemical accuracy using deep learning. And to make real progress, we need the community’s feedback. #compchem
The wait is over! Microsoft Research is sharing Skala, the new exchange-correlation functional, marking a major milestone in the accuracy/cost trade-off in DFT. Help us learn from your testing so we can improve. Available on Azure AI Foundry and GitHub. msft.it/6016sFDLY
Ryota Tomioka retweeted
Job alert! Check out our open roles (Senior Researcher, Senior Applied Scientist, Senior Data Engineer) for AI for materials discovery.
🚨We are hiring! 🚨 Want to join a highly talented, collaborative team and build the next frontier model for materials design? Apply to the following roles and join our materials team at @MSFTResearch AI for Science. Location can be Cambridge UK or Amsterdam NL or Berlin DE.
Senior Researcher in Deep Learning: jobs.careers.microsoft.com/g…
Senior Applied Scientist: jobs.careers.microsoft.com/g…
Senior Research Engineer on Data: jobs.careers.microsoft.com/g…
Senior Research Software Development Engineer(w/ our engineering team): jobs.careers.microsoft.com/g…
Ryota Tomioka retweeted
Hiring for BioEmu project @MSFTresearch AI for Science. Berlin DE or Cambridge UK.
aka.ms/bioemu-ml - #MachineLearning Researcher
aka.ms/bioemu-data - Data Engineer
aka.ms/bioemu-applied - Applied Researcher
aka.ms/bioemu-principal - Principal Applied Researcher
BioEmu now published in @ScienceMagazine !!
What is BioEmu? Check out this video:
youtu.be/LStKhWcL0VE?si=tQQX…
Ryota Tomioka retweeted
We’re thrilled to share that Tian Xie, Principal Research Manager at Microsoft Research AI for Science, has been named to MIT Technology Review’s 2025 Innovators Under 35! Tian recently led the development of MatterGen, our generative AI model for materials discovery. msft.it/6010s9dse
Ryota Tomioka retweeted
Exciting work by our team, representing a real step forward in understanding the protein dynamics that power biological function.
Researchers have developed a #DeepLearning system called BioEmu that rapidly generates diverse protein conformations, enabling fast, accurate insights into protein flexibility and function.
Learn more this week in Science: scim.ag/41rCpxZ
























