@proteomicsdb
proteomicsdb.org
Joined July 2014
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Due to a failure in the cooling system of our server room, ProteomicsDB is currently unreachable. We expect the servers to be down until Monday, 5 August at 12 p.m. We apologize for the inconvenience!
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Due to a technical issue, ProteomicsDB and Prosit are currently not reachable. We expect the servers to be down until tonight, 11pm. Sorry for the inconvenience!
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ProteomicsDB will go into maintenance mode at 14:30 today. During that time, all services of ProteomicsDB, including Prosit and our API, will not be accessible. We expect the downtime to last till 19:00 today, but hopefully, it will be shorter.
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ProteomicsDB is back up again!
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Christmas is coming, and ProteomicsDB is getting ready to spread even more joy to the community! Due to an update, expect some downtime on Monday, 4 December.
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We are very happy to announce that our latest story was published in @ScienceMagazine yesterday! 🥳🎉 science.org/doi/10.1126/scie… (1/6)

Decrypting drug actions and protein modifications by dose- and time-resolved proteomics

Dose-dependent effects of drugs on post-translational modifications reveal insights into their actions.

science.org
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ProteomicsDB is back up again! Including lots of new data and our completely new user interface! Come check it out at proteomicsdb.org.
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If you're feeling nostalgic, you can still access our old UI at proteomicsdb.org/old/.
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ProteomicsDB will go into maintenance mode next week. During that time all services of ProteomicsDB including Prosit and our API will not be accessible. We expect the downtime to span between Tuesday (26.07.) and Friday (29.07.), but hopefully it will be shorter.
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You can submit jobs as long as the website is up, but they will only be processed after maintenance is over. We will keep you informed here.
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New technology advance - parallel single cell transcriptomics and proteomics analysis using nanodroplet splitting. And I am certainly delighted to see that "All proteomic data raw files were processed by FragPipe" (with quant using IonQuant MBR option).
YingZhu@NanoPOTS_SCP18 May 2022
As single cell proteomics person, we always try to compare protein measurements to transcript, what if we can do both on the same cells? Great job by @cajun_science and collaboration between @EMSLscience and @Cellenion biorxiv.org/content/10.1101/…

Parallel measurement of transcriptomes and proteomes from same single cells using nanodroplet...

Single-cell multiomics can provide comprehensive insights into gene regulatory networks, cellular diversity, and temporal dynamics. While tools for co-profiling the single-cell genome, transcriptome,...

biorxiv.org
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ProteomicsDB retweeted
Henry@Henrywebel26 Mar 2022
Thanks for attending the @EuBIC_ms Winterschool 2022 (in spring this year)! Many thanks to keynote speakers, workshop organizers and active participants:) In case you forgot, a picture to keep you remember one important question:
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Ludwig presenting our recent developments on turning ProteomicsDB into a fair resource in life science #asms2021
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ProteomicsDB retweeted
MSAID
@msaid_de30 Oct 2021
Would you like your name as a peptide MS2 spectrum? For everyone joining #ASMS2021 online we are happy to send it to you. Request one here: forms.gle/A9EW5XrKikvwN4Sk6 Everyone attending in-person, please visit us at booth #301 and we print you your spectrum on the spot!
Siegfried Gessulat@sgessulat29 Oct 2021
#ASMS2021 Would you like your name as a predicted spectrum? Visit us at the @msaid_de booth - entrance right side. Would love to print you one! [O==M(ox)]
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Ludwig Lautenbacher will talk (ThOD am) about ProteomicsDB and our recent developments towards a FAIR open-source resource for life-science research @asms2021
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We are working on a new feature in ProteomicsDB that will enable you to generate your own plots. For this we would like to get your input: tinylink.net/crh9U (5-10 minutes survey)
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ProteomicsDB retweeted
MS Lee Lab@msleemslab8 Mar 2021
Open positions for #PostDoc and #PhDstudents in clinical #proteomics at Technical University of Munich #TUM #Germany #Munich #Freising We are looking for the group members from May 2021. See more on our website and join us! mspec-sysns.de

Young Investigator Group: Lee Lab

Young Investigator Group founded by BMBF. The group is about applying mass spectrometry in systems neurosciences. And it is led by Chien-Yun Lee at the Technical University of Munich

mspec-sysns.de
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The lecture on non-ignorable missing data for 𝑺𝒕𝒂𝒕𝒊𝒔𝒕𝒊𝒄𝒔 𝒇𝒐𝒓 𝒑𝒓𝒐𝒕𝒆𝒐𝒎𝒊𝒄𝒔 is up slavovlab.net/stats Thanks to Professor Franks (@afranks53) for introducing the subject!
Non-Ignorable missing data

ALT Non-Ignorable missing data

Prof. Nikolai Slavov
@slavov_n23 Nov 2020
We will teach a YouTube course: 𝑺𝒕𝒂𝒕𝒊𝒔𝒕𝒊𝒄𝒔 𝒇𝒐𝒓 𝒑𝒓𝒐𝒕𝒆𝒐𝒎𝒊𝒄𝒔  - Each lecture will introduce one topic in 5-10 min max.  - Example topics are listed below. Please suggest additional topics you would like to learn about as comments. slavovlab.net/teaching/Stati…
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Maintenance is over! ProteomicsDB.org and its services are now back online. Feel free to explore the new release which includes now data for Mouse! More information regarding this update can be found here: proteomicsdb.org/proteomicsd… #mouse #proteomics #database #multiomics
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Day #2 of the maintenance and everything is running smoothly! Our SSL certificate is updated too! See you soon! #advent_of_IT #proteomics #maintenance #new_organism
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