@phylomedb

PhylomeDB is a public database for complete collections of gene phylogenies (phylomes), maintained by @gabaldonlab

 Barcelona
phylomedb.org
Joined March 2012
  • Tweets241
  • Following46
  • Followers205
38Media
Another genome evolution analysis powered by @phylomedb
IRB Barcelona
@IRBBarcelona12 Apr 2023
🦠🐟🐠How did skates evolve to develop wing-shaped fins? 👉These organisms are highly relevant for studying the evolution of human traits, such as limbs. 📰A work involving #IRBBarcelona & @BSC_CNS, led by @CABD_UPO_CSIC, out in @Nature. ➡️bit.ly/400Qb78 #IRBScience
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phylomedb retweeted
BSC-CNS@BSC_CNS13 Apr 2023
🗣 @toni_gabaldon @gabaldonlab: "We have used databases of sequenced organisms to reconstruct the evolutionary history of all the genes in the genome—a computationally intense process that we have been able to do quickly thanks to MareNostrum" ➡bsc.es/Zu2 @Nature
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📢 New Feature in @phylomedb ! PhyloExplorer allows you to better decide which phylome suits your need by selecting a set of species that the phylome must contain, and indicating what other species are in each phylome and how well they are represented phylomedb.org
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Kudos to @majerdaniel937 and Diego Fuentes from @gabaldonlab
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We are launching #EvolClustDB a database of #eukaryotic gene clusters that show evolutionary conserved gene neighborhood. Check it out and let us know what could be improved. Mine it to find potentially relevant but unstudied genes in #eukaryotes evolclustdb.org/
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In @phylomedb browser trees are indeed interactive 😏 #ECCB2022 phylomedb.org/
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phylomedb retweeted
CNAG@cnag_eu1 Jun 2022
📚Western Spadefoot toad sequenced, a key species to study how organisms respond to global change The #CNAGCRG contributes to the study led by @ebdonana that will help to understand how environmental variations can induce changes at the gene expression level 📸 by @IGomezMestre
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Study powered by @phylomedb
CNAG@cnag_eu1 Jun 2022
📚Western Spadefoot toad sequenced, a key species to study how organisms respond to global change The #CNAGCRG contributes to the study led by @ebdonana that will help to understand how environmental variations can induce changes at the gene expression level 📸 by @IGomezMestre
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Check out our paper describing the genome of the Western spadefoot toad, which was the result of a long and great collaborative effort! Happy to see it finally out @IGomezMestre @gabaldonlab @cnag_eu
Ivan Gomez-Mestre@IGomezMestre25 May 2022
The chromosome-level genome of the charismatic Western spadefoot toad is finally out. A collaborative effort with @cnag_eu’s Genome Assembly and Annotation team and @toni_gabaldon’s team. Let’s keep increasing amphibian genomic resources!! academic.oup.com/dnaresearch…
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Check the Western spade foot toad phylome at @phylomedb !
Ivan Gomez-Mestre@IGomezMestre25 May 2022
The chromosome-level genome of the charismatic Western spadefoot toad is finally out. A collaborative effort with @cnag_eu’s Genome Assembly and Annotation team and @toni_gabaldon’s team. Let’s keep increasing amphibian genomic resources!! academic.oup.com/dnaresearch…
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The chromosome-level genome of the charismatic Western spadefoot toad is finally out. A collaborative effort with @cnag_eu’s Genome Assembly and Annotation team and @toni_gabaldon’s team. Let’s keep increasing amphibian genomic resources!! academic.oup.com/dnaresearch…
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Very glad to see our work on "The long non-coding RNA landscape of Candida yeast pathogens" out in @NatureComms #Candida pathogens have hundreds of #lncRNAs that are poorly conserved, but co-expressed with protein-coding genes, some are infection-specific nature.com/articles/s41467-0…
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phylomedb retweeted
metaPhOrs@orthologs14 Nov 2021
Another great paper using #MetaPhORs. "Leveraging machine learning essentiality predictions and chemogenomic interactions to identify antifungal targets" @CowenLab and colleagues used #MetaPhOrs to find of fungal genes without human orthologs: nature.com/articles/s41467-0…
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#ELIXIRFridayReads is from @phylomedb on their new release: ✨ New web interface 👩‍💻 User-defined phylome collections 🌲 534 phylomes, 8 million trees & homology for >6000 species! @gabaldonlab, @toni_gabaldon, @BSC_CNS, @IRBarcelona @INB_official bit.ly/3mZAFb3
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Check out the @NAR_Open article describing last upgrade of #PhylomeDB: "PhylomeDB V5: an expanding repository for genome-wide catalogues of annotated gene phylogenies" academic.oup.com/nar/advance…
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Note this! #PhD
Marco Milan@MarcoMilanIRB15 Oct 2021
PhD positions @IRBBarcelona, a wonderful place to carry out a PhD in a diverse range of topics in bio-medicine. Visit our web page and look for your favorite topic & lab. Call opens today!!!!!!
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Took longer than expected, but we are back. Enjoy PhylomeDB with hundreds of new phylomes,
phylomedb@phylomedb14 Sep 2021
We are doing some maintenance tasks of the @phylomedb database, and the service may be down for some time during today (14th September 2021). Sorry for the inconvenience.
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We are doing some maintenance tasks of the @phylomedb database, and the service may be down for some time during today (14th September 2021). Sorry for the inconvenience.
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Check out our #JobBoard! Announcing at the moment PhD and PostDoc positions as well as for a trainee in bioinformatics, genomics, phylogenomics. Don't miss the opportunity to join INB/ELIXIR-ES nodes, TransBioNet units, and other labs in Spain. ▶️ inb-elixir.es/jobs
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phylomedb retweeted
metaPhOrs@orthologs7 Sep 2021
#MetaPhORs has a new release (2.5)!! - Millions of orthology and paralogy relationships - for 6,384 organisms - based on the analysis of 11,430.574 gene trees - new features Check it out! 👇👇 orthology.phylomedb.org/
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