Bioinformatician at @nanopore | views are my own
Oxford, England
Joined January 2011
- Tweets226
- Following287
- Followers295
- Likes225
Philipp Rescheneder retweeted
Human phased T2T (20 T2T chromosomes + 9 further scaffolds) assembly from standard ligation library + 10X PoreC on a single PromethION flowcell (the unreleased high output chemistry)
#Nanoporeconf
Philipp Rescheneder retweeted
Incredible few days at the Nanopore Community Meeting. Thank you to @nanopore for inviting me to talk about our work looking into base-pair level chromatin accessibility @nickdlowens #nanoporeconf
Philipp Rescheneder retweeted
Applications group presenting breadth of data available from a single @nanopore flowcell. #nanoporeconf
Philipp Rescheneder retweeted
Dorado v0.8.0 #ncm24 release!
- v5.0 DNA transformer model performance improved for A100/H100 via kernel fusing, quantisation and leveraging i8 tensor cores.
- v5.1 RNA models with updated mod calling for m6A, pseU, and brand new calling of Inosine and m5C.
- Improved dorado correct performance, stability and flexibility.
- Introduces per-barcode configuration for poly(A) estimation with interrupted tails.
#nanoporeconf
github.com/nanoporetech/dora…
Philipp Rescheneder retweeted
Incredible presentation from Noah Bryan (a high school student!!!) on the detection of contaminated drinking water. And a clever rhyming title too! #nanoporeconf
Philipp Rescheneder retweeted
👀 @nanopore #EPI2ME is really everywhere! Now even on your @Apple iPad.
apps.apple.com/gb/app/epi2me…
Philipp Rescheneder retweeted
Published today in @Nature, we describe an approach for single-molecule protein reading on @nanopore arrays. By utilizing ClpX unfoldase to ratchet proteins through a CsgG nanopore, we achieved single-amino-acid sensitivity. nature.com/articles/s41586-0…
Philipp Rescheneder retweeted
Edlib sequence aligner, github.com/Martinsos/edlib, has more than 500 starts now. Kudus to @MartinSosic, who did this for his master's thesis and has continued to improve it over the years!
Philipp Rescheneder retweeted
A fantastic opportunity to keep breaking barriers on RNA biology
📢I'm #hiring! I have two positions open in my #RNA R&D team! I'm looking for experienced RNA biologists: one #Scientist & one #Manager level. Experience w/ @nanopore #directRNA and/or #biopharma #mRNA manufacturing AD/QC desired but not required. Details👇linkedin.com/posts/libby-sne…
Philipp Rescheneder retweeted
Open data set release for highly accurate @nanopore only telomere-to-telomere (T2T) assemblies #nanoporeconf
labs.epi2me.io/lc2024_t2t/
Philipp Rescheneder retweeted
Welcome to London ! At #nanoporeconf this year we will be live sequencing 10 Endangered and Critically Endangered Species to coincide with 10 years of London Calling. All supported through our ORG.one programme. Please come speak to us about it @nanopore
Philipp Rescheneder retweeted
Median qscore 26.36, read n50 91 kb. Please have a look and let us know how you get on
Philipp Rescheneder retweeted
Check out the data from this experimental extremely high-accuracy, ultra-long sequencing kit here labs.epi2me.io/gm24385_ncm23…
The numbers from this tech update are incredible.
What’s more, telomere-to-telomere (#t2t) assemblies now achievable with JUST simplex.
Q28 simplex data is accurate enough.
You do not need data from any other platform — paving the way for @nanopore T2T assembly, using just simplex data.
#nanoporeconf 1/2
Philipp Rescheneder retweeted
Our first go at assembling @nanopore high accuracy simplex data presented by Sean mckenzie. Dataset going up now in Epi2me labs
Philipp Rescheneder retweeted
SM: @nanopore only T2T assembly enable by highly accurate ultra-long reads using off the shelves tools #NanoporeConf – at Houston, TX
Philipp Rescheneder retweeted
Lakmal kicking off @nanopore tech update in NCM Houston - where he did his PhD. Lakmal runs out R&D bio and has been central to our Nanopore chemistry since before Oxford Nanopore was formed
Philipp Rescheneder retweeted
You've heard of Data for breakfast, now get ready for Data after dark!
Join us for an exclusive in-person informatics update at NCM Houston. Hear the latest updates on basecalling & data analysis.
Not got your ticket yet? Get it now: bit.ly/3QYqOjV #nanoporeconf
Philipp Rescheneder retweeted
Crikey this is great. Bit of tumour out, swizz it on the minION, quick bit of bioinformatics while the surgeon has a cup of tea and a biscuit, then you’ve figured out tumour type and hence how aggressive the resection need be. @jereon_deridder
nature.com/articles/s41586-0…
Come and work with us! It's an amazing team and an incredible opportunity to develop computation tools that will have real world impact in a wide range of areas as well as being part of pushing the boundaries of what is possible with DNA and RNA sequencing.
Two more openings in our applications development team. Come help us build new computational methods and software to fully leverage the tremendous recent improvements in @nanopore sequencing!
ejnh.fa.em2.oraclecloud.com/…