Computational Systems Biomedicine researcher at FIMM Passionate about data-driven biological discovery and finding treatments for diseases
Finland, Turku
Joined April 2010
- Tweets338
- Following574
- Followers261
- Likes1.3K
Mitro Miihkinen retweeted
Job alert! Joint us in Heidelberg to develop and apply computational methods to dissect molecular variation in CRC cancer. #Postdoc #SpatialOmics #MultiOmics #AI
Apply here: embl.org/jobs/position/HD027…
We are looking for a postdoctoral researcher!
Join our translational project aimed at exploring the processes that alter the epigenetic landscape of colorectal cancer cells and drive their metastasis.
Become part of our group at @EMBL
Apply here: embl.org/jobs/position/HD027…
Mitro Miihkinen retweeted
🚨 Great alternatives to BioRender are now available!!
📢 @NIAIDNews offers a collection of public figures and icons for everyone to use. Check it out at bioart.niaid.nih.gov
Mitro Miihkinen retweeted
If you think the next big idea in your field will come from inside the field, you're probably wrong.
ALT https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-01985-6
Mitro Miihkinen retweeted
Join FIMM as a MSCA Doctoral Researcher, to work in the field of multiplexed immunofluorescence profiling of cancer metastases. This fully funded 4-year position in Teijo Pellinen's team is part of the #Mac4Me network.
Apply by Nov 22 👇
jobs.helsinki.fi/job/Helsink…
#sciencejobs
Mitro Miihkinen retweeted
A new study in Science #Immunology highlights how LIPSTIC, a proximity-based labeling method, can identify antigen-presenting #DendriticCells that activate #CD4+ TCells in the tumor and tumor-draining lymph nodes in mice. scim.ag/8pd @ChudnovskiyLab @victora_lab
Mitro Miihkinen retweeted
In case you are looking for an interesting/easy reading this weekend, how about some thoughts on in vitro human cell-based models cell.com/cell/abstract/S0092… @CellPressNews @TheLutolfLab @TakebeLab
Mitro Miihkinen retweeted
scTherapy, a novel machine learning approach from Tero Aittokallio and colleagues, leverages single-cell transcriptomic profiles to identify multi-targeting treatment options for individual patients with hematological cancers or solid tumors. helsinki.fi/en/hilife-helsin…
Mitro Miihkinen retweeted
👇🔬🧫Exciting story about human breast composition and 3D architecture in @CellReports: cell.com/cell-reports/fullte…👇Led by @oonakaroliina and Markus Peurla (@EPeuhu lab @BioscienceTurku ) with help of @kamyab_saberi and @larissamourao_ @vib_ccb @Onco_KULeuven
🚨Publication alert! 🤝@EPeuhu
I'm thrilled to announce that this project, the apple of my eye, is out! Here, we unveiled the 3D architecture and shed light on cellular complexity of healthy human breast tissue. I would love to tell you more about it🧵👇 :cell.com/cell-reports/fullte…
Mitro Miihkinen retweeted
Excited about multi-omics in health? We have a fully-funded PhD position on AI for multi-omics analytics as part of HIDDS4Health call 2024. Apply here: hidss4health.de
Mitro Miihkinen retweeted
Researchers at FIMM have developed an effective computational platform that automatically identifies cell types from #SpatialTranscriptomics data. The method holds great potential for understanding tissue organisation in both health and disease.
💻⬇️
helsinki.fi/en/hilife-helsin…
ALT Doctoral Researcher Kristen Nader sits at her office desk working on her laptop, which is connected to a larger computer screen displaying a detailed scientific data visualization.
Mitro Miihkinen retweeted
scType
Marker-based cell type annotation for #SpatialTranscriptomics Visium Slide-seq
Use positive + negative markers (from scTypeDB database with previously scRNAseq-identified cell type markers or custom marker genes), instead of deconvolution.
R & Python
github.com/kris-nader/sp-typ… or github.com/kris-nader/sc-typ…
Mitro Miihkinen lab Bioinformatics 2024 @mitroe
academic.oup.com/bioinformat…
Mitro Miihkinen retweeted
ScType enables fast and accurate cell type identification from spatial transcriptomics data academic.oup.com/bioinformat… #bioinformatics #feedly
Mitro Miihkinen retweeted
Postdoc alert 🚨 Would you like to find regulatory programs driving colon cancer heterogeneity? Join us at @NCMMnews in a collaboraion with Anita Sveen at the Radium hospital, and model & analyze networks for multiregional samples, metastases & organoids👇
jobbnorge.no/en/available-jo…
Mitro Miihkinen retweeted
Thrilled for our latest paper on network robustness & resilience, in collaboration w/ a dream team of colleagues: 👉 rdcu.be/dvsId
We review 2+ decades of theory & applications within a unifying framework, to better understand complex networks' structure & function.
Mitro Miihkinen retweeted
Best practices for single-cell analysis across modalities😋
A comprehensive must-read for single-cell & spatial omics learners
@LukasHeumos @AnnaCSchaar @fabian_theis @NatureRevGenet 2023
nature.com/articles/s41576-0…
Copiable, Essential Codes available👇👏
sc-best-practices.org/preamb…
Mitro Miihkinen retweeted
I released a first version of a book on data visualization with R & ggplot2.
Target audience = wet lab scientists.
It's work in progress, so any feedback/suggestions/comments are appreciated!!
#DataViz #Rstats
joachimgoedhart.github.io/Da…
Mitro Miihkinen retweeted
The first preprint of PeuhuLab is out! Morphometric analysis of the terminal ductal lobular unit architecture in human breast. biorxiv.org/content/10.1101/… Big congrats to Markus Peurla and @oonakaroliina! Thank you collaborators! @ColindaScheele Main findings in 🧵
Mitro Miihkinen retweeted
The @cziscience team is excited to launch our new Gene Expression feature on #CZCellxGene! It helps researchers identify marker genes using RNA expression data across 31M+ cells:
bit.ly/3xZl5RM