Image analyst of microscopy data at EBI-EMBL

Cambridge, England
Joined February 2016
Craig Russell retweeted
Get ready for a game-changing development! AI4Life and @LeicaMicro have joined forces to integrate #DeepLearning models from @bioimageio into @AiviaSoftware. Industry-academia teamwork in action! 🔬🚀 ai4life.eurobioimaging.eu/ai…
Did you know? @LeicaMicrosystem’s AIVIA software now integrates models from the BioImage.io, a public repository of FAIR, pre-trained AI Models developed within the @AI4LifeTeam project to reach a wider user community! #industrycollaborations eurobioimaging-industryboard…
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Craig Russell retweeted
We discovered a surprisingly easy way to control the brightness of fluorescent proteins via magnetic fields: andrewgyork.github.io/gfp_ma… This raises fascinating scientific questions about the mechanism, and tantalizing technological opportunities for bioengineering.
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Craig Russell retweeted
This year, the BioImage Computing (#BIC) workshop will go down at ICCV in Paris! 🥐 Submit your work between June 21st and July 21st and join us at ICCV! Check out the preliminary program: bioimagecomputing.com/progra… – at Baranzate, Lombardia
This years BioImage Computing (BIC) Workshop is going down today in Tel Aviv at @eccvconf. bioimagecomputing.com The show gets started by Alexander @sagzehn Krull… first invited speaker is David @davidvanvalen. Lots of great talks to come! 🎉
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Day 5... Distributed/Cloud computing, and Advanced topics (Terminal, Snakemake, pyTorch)! Jean Marie Burel, @WalczyskoPetr and @microRussell join us on the last day of the 'Microscopy data analysis: machine learning and the @BioimageA' @EBItraining course. Thank you all!!
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Craig Russell retweeted
Looking for an engaging Friday read? Check out the comprehensive report by @gomez_mariscal in @focalplane_jcs, highlighting AI4Life's active participation at the 5th @NEUBIAS_ Conference: focalplane.biologists.com/20…
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Craig Russell retweeted
Replying to @gomez_mariscal
@gomez_mariscal takes over from Dominik to perform #DeepLearning boosted instance #NucleiSegmentation with @deepImageJ and run superresolution models in @FijiSc, all of them available in @bioimageio 🦒
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Craig Russell retweeted
Dominik Kutra from @ilastik_team help trainees with #ImageSegmentation in ilastik, explore and discover the tools in the @bioimageio 🦒 and run the model zoo models in ilastik.
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Craig Russell retweeted
And now comes the hands-on session! How to look for a model in @bioimageio to segment Bacillus Subtilis bacteria? Can the model be downloaded and run? @gomez_mariscal teaches all this and more!
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A special thanks to @EoscLife for the support given for the organisation of the 'Microscopy data analysis: machine learning and the @BioimageA' @EBItraining course, along with #BINASupport to our amazing delegates from @BioimagingNA. One more day to go!!
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Craig Russell retweeted
We are #hiring PhD students and Postdocs in #AI, #deeplearning #computationalbiology, #bioimaging, #robotics and #wholecellmodeling I recently joined @KTHuniversity as an assistant professor and starting a new research group ( AICell Lab: aicell.io) at @scilifelab
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Applications for our #microscopy virtual course, focusing on #machinelearning and the @BioimageA close this Sunday. Submit yours now: ebi.ac.uk/training/events/mi… Run in association with @EoscLife Funding available* from @BioimagingNA *T&Cs apply.
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Craig Russell retweeted
🚨Job Alert 🚨 We are looking for a #BioimageAnalyst and/or #RSE to join our growing image analysis facility here at Human Technopole in the beautiful city of Milan, Italy. #Apply before December 16! forum.image.sc/t/job-opportu…
If it's #microscopy training you're looking for, sign up for alerts on our 2023 course featuring @EMDB_EMPIAR as well as the @BioImageA. Applications open next week. Run in association with @EoscLife. ➡️ebi.ac.uk/training/events/mi…
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Craig Russell retweeted
Big congrats to @VirginieUhlmann for being appointed as our Deputy Head of Research! 🎉 Virginie will support the coordination of our research groups, while continuing to lead her own group focusing on bioimage analysis. ebi.ac.uk/about/news/announc…
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🚨💻🔬🤩 #SoftwareEngineers Assemble!! Looking for 2 #DeepLearning #BioImageAnalysis developers for the #AI4LIFE project. Projects follow the ethos of #ZeroCostDL4Mic, democratizing free access to next-generation imaging technology. Come join us! euraxess.ec.europa.eu/jobs/8…
September 1st is the official start date of the #AI4LIFE project 🙌! We are so excited about this @HorizonEU project to develop cutting-edge services for #AI-driven #imageanalysis. Project kicks off 🚀in Heidelberg in October. Stay tuned!⤵️ eurobioimaging.eu/news/proud…
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🙋Hands up if you enjoyed a week of @emblebi training! Thank you to all the organisers, trainers, and trainees that joined us & @TenEnlight for this week's training course on T-Cell immunology. 🔗Further your #bioinformatics knowledge with @EBItraining: ebi.ac.uk/training/live-even…
With all the people tagged above + @martweig, @guijacquemet, @petebankhead, Tom Burke, Lucia Moya-Sans, Cristina de-la-Torre-Gutiérrez, Deborah Schmidt, Maksim Novikov and Dominik Kutra.
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For users and developers of deep learning models in microscopy, we hope to have built a home where such models can be shared and discovered to be run in our desktop and cloud tools. Try it out, give us feedback, join the community!
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Together with the wonderful collaborators and community partners, we are happy to finally present the BioImage Model Zoo at bioimage.io, now described in biorxiv.org/content/10.1101/….
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