Marie Skłodowska-Curie PhD student at @Pensoft & the Bulgarian Academy of Sciences and @itn_ignite ITN ESR 🦑 @MSCActions

Bulgaria
Joined June 2017
Ever wonder how Russian cruise missiles find their way into Ukrainian playgrounds, power stations, and apartment buildings? Well thanks to @bellingcat’s @christogrozev wonder no more. It’s time to meet the team behind the targeting of Russian missiles on civilian infrastructure.
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We published a software description paper of OpenBiodiv: doi.org/10.3897/BDJ.9.e67671. Thanks to everyone who contributed and the reviewers and editor for their helpful suggestions! @vsenderov @TeodorGeorgiev Georgi Zhelezov & @LyuboPenev @BioDataJournal @Pensoft
🗨️"We envision #OpenBiodiv-LOD as an integral part of the existing semantic network of #biodiversity knowledge, based on HTTP identifiers & controlled vocabularies," says the team 👉More about the latest developments at @Pensoft's OpenBiodiv: doi.org/10.3897/BDJ.9.e67671 #BiCIKL_H2020
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Mariya Dimitrova retweeted
Dimensions: where is the #biodiversity data, already now and more in the future #BiCIKL_H2020
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Mariya Dimitrova retweeted
Great day with the kickoff meeting of @Bicikl_H2020 to to build a new linking and access infrastructure to #biodiverseome and strengthen the underlying omics and #biodiversity research infrastructures @euresearch @EU_H2020 @SwissEuresearch
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Mariya Dimitrova retweeted
Introducing the #Omics #DataPaper to pave the way to omics #data sharing, reuse & interoperability through #ScholarlyPublishing ➕ workflow for import of metadata into scholarly #manuscripts via @ARPHAPlatform. [1/3] ➡️More: doi.org/10.1093/gigascience/…🔓 #FAIRdata #Biodiversity
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Mariya Dimitrova retweeted
.@DBPedia Natural Language Interface Using @Huggingface Transformer Query: “where does Bill Gates work?” Find likely URI for Bill Gates, get comment text for DBPedia entity, pass query to transformer w context=text collected via #SPARQL #Knowledgegraph markwatson.com/blog/2021-01-…
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Mariya Dimitrova retweeted
Making Parasite-Host Associations Visible using Global Biotic Interactions doi.org/10.3897/biss.4.58985 - Contributed Oral Presentation by Katja Seltmann now available at youtube.com/watch?v=2mBrZz1u… via @tdwg @YouTube channel #TDWG2020
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Mariya Dimitrova retweeted
Just in time for #OAweek, @ebitraining is delivering this excellent webinar covering #FAIRdata principles, #datamanagement and submission best practices and pointers on using #openaccess literature + data to advance your research.👇#SupportOA
As part of the @emblebi celebration of #OAweek, this special one-off #webinar will give you insight into the benefits of open access data, alongside guidance and tips on how to manage your data. 📩 Registration is free, but essential.

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Mariya Dimitrova retweeted
@gwoerhe introducing @itn_ignite in the #BiodiversityGenomics2020 Showing the research of @ksenia_juravel (@LMU_Muenchen) @mdmtrv (@Pensoft) @Arielzyc (Zoological State mu. Munich) Kenneth (@nuigalway). Next talk from #ITN_IGNITE is by @NGuiglielmoni! Join @GIGA_COS session!
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Mariya Dimitrova retweeted
After literally years of intense work, our preprint on the applications of universal probabilistic programming in phylogenetics is out.
Probabilistic programming: a powerful new approach to statistical phylogenetics biorxiv.org/cgi/content/shor… #bioRxiv
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Mariya Dimitrova retweeted
How are you gonna say All Lives Matter when just two months ago you wanted to sacrifice your grandma for the economy?
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Mariya Dimitrova retweeted
This is a single mosaic image of the world’s second biggest tree, a sequoia called 'The President'. Comprised of 126 Frames, 2 Billion Leaves, and at 75.3 m tall, the sight is quite impressive buff.ly/2NHywPw
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Did you know that if you go anti-vax hard enough, sometimes you circle all the way back to inventing vaccines?
As seen on FB. What a concept.
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#ESR Nadege (@NGuiglielmoni ) giving a class on genome assembly and how it may drive you a little crazy 🙂 #ITN_IGNITE #ITN @MSCActions @EU_H2020
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No worries, new ideas are always welcome. No web service calling, just a query to a local mongodb collection. I'm sure the process can be optimised in other ways though..
Replying to @mdmtrv
When you say lookup, are you calling a web service each time? Can you cache the results locally to that the lookup is only done once? Or have a local copy of the name database you're querying and do search within that database? Apologies if these are things you've already tried.
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Thanks! I still need to research how to enable comments with hexo but will tweet when I do. But yes.. it is slow. Usually an article contains hundreds or even thousands of taxonomic names, each of which is a lookup. Not even counting the other components
Replying to @mdmtrv
Great to see your blog. Is it possible to leave comments? I gasped when I saw that it takes months to process Pensoft XML in R!? That seems, um, slow...
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