Comparative Genomics and Metagenomics. Group Leader at @CBGP_Madrid. Former scientist at @EMBL, @CRGenomica and @CIPFciencia.
Madrid, Spain
Joined May 2011
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The CGMLab is seeking an experienced postdoctoral researcher to work on an EU project focusing on the bioprospecting of novel microbial enzymes and pathways through metagenomics. Further information and application form can be found at: jobs.cgmlab.org/o/postdoc-po…
The CGMLab is seeking an experienced postdoctoral researcher to work on an international project focusing on the clinical associations of the microbiome of the female reproductive tract and heavy menstrual bleeding disorder. Applications and info at jobs.cgmlab.org/o/postdoc-po….
📢 We are hiring!
PhD Position in Metagenomics at the CGMLab
We are looking for a motivated researcher to join our newly launched project exploring the Unknown Microbial Biosphere, focusing on uncultivated eukaryotic microbes and novel functions.
linkedin.com/feed/update/urn…
tx! This is of course the outcome of a long-term team effort!
Kudos to all current and former lab members and collaborators!!
(...yes we need to update our group photo :)
🎉Congratulations to @jhcepas for being named a Highly Cited Researcher by @Clarivate for the fifth consecutive year!
👨🔬The PI of the Comparative Genomics and Metagenomics research group at the CBGP is the only Spanish scientist included in the Biology and Biochemistry category
The Biodiversity Cell Atlas
nature.com/articles/s41586-0…
An international initiative to advance our understanding of life at cellular resolution. Many challenges ahead.We look forward to contributing through phylogenomics analyses and orthology predictions.@CBGP_Madrid @CSIC @INIA_es
The rare microbial biosphere harbors many chemosensitive microorganisms undetectable by regular shotgun metagenomics. We can now explore them using our custom target-capture sequencing approach. Impressive work by @clausanchis, part of her PhD thesis!
biorxiv.org/content/10.1101/…. .
Unveiling the hidden biodiversity of microbial chemoreceptor genes in the rare biosphere biorxiv.org/content/10.1101/… #biorxiv_micrbio
Jaime Huerta-Cepas retweeted
Check with the latest features of TreeProfiler in github.com/compgenomicslab/T… and
github.com/dengzq1234/treepr…. Here is a small demo of profiling tree over 100k leaves with multipule columns of presence/absence matrix.
Awesome work by @deng_ziqi TreeProfiler: a tool for large-scale metadata profiling along gene and species trees.
biorxiv.org/content/10.1101/…
Interactive viz of large trees + custom traits, MSA, domain architectures, functional terms & more + summary of features at internal nodes.
Awesome work by @deng_ziqi TreeProfiler: a tool for large-scale metadata profiling along gene and species trees.
biorxiv.org/content/10.1101/…
Interactive viz of large trees + custom traits, MSA, domain architectures, functional terms & more + summary of features at internal nodes.
Happy to share that I'll be giving a plenary talk at VIZBI 2025 in Cambridge UK — and online — 8–11 April 2025. Mainly about how we deal with the analysis & visualization of huge trees, metagenomics profiling, novel microbial functions, synteny & more! vizbi.org/2025
Places are filling up fast!
If you are interested in phylogenomic data analysis and tree visualisation with our new ETE4 software version, don't forget to register for our upcoming (free) course in Madrid. 👇
Travel grants still available (also overseas)
bsky.app/profile/jhcepas.bsk…
Pre-registration is now open for our second (free) course on phylogenomic data analysis and visualization using ETE, funded by @cziscience.
First time to cover new ETE4 features: Interactive viz of huge tree, profiling...
travel fellowships available!
eventos.upm.es/130955/detail…
Jaime Huerta-Cepas retweeted
This workshop we will cover not only phylogenomic project, but also coding for large tree visualization using latest features in ETE4! 5 days course from April 21 to 25, 2025 in Madrid! See you all!
Pre-registration is now open for our second (free) course on phylogenomic data analysis and visualization using ETE, funded by @cziscience.
First time to cover new ETE4 features: Interactive viz of huge tree, profiling...
travel fellowships available!
eventos.upm.es/130955/detail…
Pre-registration is now open for our second (free) course on phylogenomic data analysis and visualization using ETE, funded by @cziscience.
First time to cover new ETE4 features: Interactive viz of huge tree, profiling...
travel fellowships available!
eventos.upm.es/130955/detail…
This is a small but very nice meeting on phylogenomics in Granada, Spain. The registration deadline has been just extended to March 3rd, and there is still room for contributed talks!
Please fwd to anyone interested. I'll also be there for a few days!
mceb2025.sciencesconf.org/
Jaime Huerta-Cepas retweeted
📢 We're hiring! Looking for a postdoc in bioinformatics/data analysis to join our team at Ramón y Cajal University Hospital, Madrid.
🧬 Focus: microbiome, diagnostics, and advanced therapies. More info: t.ly/QQuD2
📅 Deadline: January 31st, 2025. Please share!
Jaime Huerta-Cepas retweeted
Come to the dark side! Join the #darkproteome team to work on plant functional annotation within our OSCARS
@HorizonEU
project FAIRFUN4Biodiversity. Great project, great advisor, great city and great team! 👇👇
@CsicLifehub
Are you interested in genome annotations? Do you want to work in Valencia, Spain. We have an open position at @IBMCP. Please contact me if you are interested or forward to who may you think that could be interested.
Jaime Huerta-Cepas retweeted
📢#CSIC4CSIC has held its 2nd edition with the training sessions of @aubombarely, @jhcepas y @BodiGonzalez : 🧬 Genome Assembly for Eukaryotic Non-Model Species 🧫 Functional and Taxonomic Analysis of Metagenomic Data. 👉Follow us to keep updated on workshops & other initiatives!
Jaime Huerta-Cepas retweeted
🎉 ¡Después de la resaca del #congresosebibc2024 retomamos el ciclo de seminarios!
🗓 18/11/2024
⏰ 15:00 (CET)
👨🏫 Álvaro Rodríguez del Río, ganador del 1er Premio Oswaldo Trelles a la Mejor Tesis 2022-2023
📚 "Comparative genomics of environmental DNA"
👉 youtube.com/live/mbrg_a5_5ac…
Hilo sobre la posible relación entre microbioma e inflamación en personas con VIH. Un trabajo liderado desde el hospital Ramón y Cajal en el que, además de aprender, aportamos nuestro granito de arena.
1/ 🦠🔥💩¿Podemos reducir la inflamación en personas con VIH modificando su microbioma?
Acabamos de publicar este estudio sobre el trasplante de microbiota fecal (FMT) y su potencial para reducir la inflamación en personas con VIH.
doi.org/10.1186/s40168-024-0… 🧵⬇️
bravo @anahernandezpl1 !
Our brilliant scientist Ana Hernández opens the final oral session on tool development, presenting a new method called ODG for orthologous groups tree-based analysis. #Bioinformatics #ToolDevelopment #ODG #congresosebibc2024
