@graph_tool

graph-tool is an efficient Python module for manipulation and statistical analysis of graphs, implemented in C++. Also on 🐘 @graph_tool@social.skewed.de

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graph-tool.skewed.de
Joined March 2021
  • Tweets30
  • Following237
  • Followers764
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Good news for Arch GNU/Linux users! Graph-tool is now available in the main repository! To install it, just do: pacman -S python-graph-tool The days of compiling graph-tool from AUR are over! Rejoice! 🎉
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Hello world! We're a research group led by @tiagopeixoto at the newly founded IT:U, Linz, Austria. We focus on inverse problems in network science and complex systems. Follow this account to get scientific updates! skewed.de/tiago

Inverse Complexity Lab – Inverse Complexity Lab

Research group on inverse problems in complex systems and network science.

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Did you know that you install @graph_tool via @condaproject, it will install binaries that are optimized for your specific CPU micro-architecture, including SIMD vectorization, in addition to having OpenMP enabled? It's awesome! Try it out today!
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Good news everyone! A new version of graph-tool is just out! @graph_tool graph-tool.skewed.de @graph_tool is a comprehensive and efficient Python library to work with networks, including structural, dynamical, and statistical algorithms, as well as visualization. 1/N
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New website! graph-tool.skewed.de

graph-tool

Efficient network analysis with Python

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Applying Bayesian generative stochastic block modelling to the molecular data of individual patient lesions, we reveal a hierarchical network structure of tumour genetics. Powered by @tiagopeixoto's @graph_tool: check it out for your research. 3/6 🧵
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Replying to @graph_tool
@graph_tool does this! graph-tool.skewed.de/static/…

ModularityState

graph-tool.skewed.de
George Richardson@g_r_richardson
13 Jul 2023
This could open a can of worms but... should libraries that offer modularity maximisation methods issue a health warning when the relevant functions are imported? Or maybe just a note in the docs would do the same without bringing scientific debate to the command line
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Replying to @graph_tool
@graph_tool's documentation has just gotten a facelift! Besides an overall re-organization, now there's a new and improved quick start guide. Check it out and tell your friends! graph-tool.skewed.de/static/…
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Did you know that you can easily use @graph_tool with @SingularityApp? Singularity/Apptainer lets you run containers in HPC clusters *as a regular user*. This means you do not have to ask your sysadmin to install software for you! Easy instructions: git.skewed.de/count0/graph-t…

installation instructions · Wiki · Tiago Peixoto / graph-tool · GitLab

graph-tool is an efficient Python module for manipulation and statistical analysis of graphs (a.k.a. networks). http://graph-tool.skewed.de/

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Replying to @moeslim_roni @graph_tool @SingularityApp
It's often ~200x faster, does better visualization (IMO), and contains many different algorithms, including inferential community detection. graph-tool.skewed.de/perform… graph-tool.skewed.de/static/…
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Good news everyone! A new version of graph-tool is just out! @graphtool graph-tool.skewed.de Single line installation: Anaconda ⤵️ conda create --name gt -c conda-forge graph-tool Homebrew ⤵️ brew install graph-tool Debian/Ubuntu⤵️ apt-get install python3-graph-tool 1/2
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I've moved the @graphtool mailing list to a discourse forum at forum.skewed.de/c/graph-tool The interface is a bit more friendly to many, but it is still possible to interact with it via email, much like a mailing list. The whole archive has been mirrored there as well.
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Do you want to study the rich US faculty hiring dataset just published with the paper below by @hneutr, @_szhang, @aaronclauset and @DanLarremore ? It's now also on @netzschleuder on several formats, and can be easily loaded into @graphtool! See: networks.skewed.de/net/facul…
Hunter Wapman@hneutr
21 Sep 2022
1/ New paper! nature.com/articles/s41586-0… with @_szhang @aaronclauset @DanLarremore. 🎓 We analyzed all 295K tenure-track faculty at US PhD-granting universities in 10,612 departments over 10 years to quantify hierarchy and dynamics in US faculty hiring and retention. 🦥 A summary:
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Good news everyone! A new version of graph-tool is just out! @graphtool graph-tool.skewed.de Single line installation: anaconda ⤵️ conda create --name gt -c conda-forge graph-tool homebrew ⤵️ brew install graph-tool debian/ubuntu⤵️ apt-get install python3-graph-tool
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A new year, a new version of graph-tool is out!! @graphtool graph-tool.skewed.de Single line installation: anaconda ⤵️ conda create --name gt -c conda-forge graph-tool homebrew ⤵️ brew install graph-tool debian/ubuntu⤵️ apt-get install python3-graph-tool
Fit of the hierarchical SBM for a weighted food web. More here: https://graph-tool.skewed.de/static/doc/demos/inference/inference.html

ALT Fit of the hierarchical SBM for a weighted food web. More here: https://graph-tool.skewed.de/static/doc/demos/inference/inference.html

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Giant component evolution on random network. Using @graphtool and based on Barabási's Network Science book (2016). #graph #networks #Python
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The network of this tweet:
This Post is from an account that no longer exists. Learn more
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A new version of graph-tool is out! @graphtool graph-tool.skewed.de It includes a 5x speedup of the SBM inference multilevel algorithm for principled community detection! Let it rip on your very large networks! See the HOWTO here: graph-tool.skewed.de/static/… 1/3
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