A @velsera project enabling cancer multiomics research at petabyte scale.
Joined November 2014
- Tweets620
- Following231
- Followers1K
- Likes415
CancerGenomicsCloud retweeted
Join us this Feb 28 for a #Cancer #Genomics #Cloud webinar on genomic rearrangements in cancer! Isabel Rodriguez & Ayse Keskus from the @theNCI will present new research from long-read DNA-seq on #HPV infections in #cervicalcancer & head and neck cancers. cancergenomicscloud.org/webi…
CancerGenomicsCloud retweeted
Bioinformatics’ growth leads to the recognition of its value in healthcare. Can a condensed intro course teach students authentic analysis? Prof. Jeremy Chien taught 14 first-year biology students cancer genomics using CGC. Learn more: sevenbridges.com/teaching-in…
CancerGenomicsCloud retweeted
Great success for our Velsera sales team and science experts at #AACR23 Engaging with potential clients, presenting talks and posters, and showcasing our solutions for precision R&D, global omics, and insights.
#AACR23 #CancerResearch #EraofVelsera
CancerGenomicsCloud retweeted
Excited that the @genomicscloud supported part of the @DSI_Africa Consortia meeting. @Bledine , @Rfbeck2, and Soner showed how the CGC helps researchers #collaborate and analyze #imaging data. #NCICommons #DataScience
sevenbridges.com/the-cancer-…
CancerGenomicsCloud retweeted
IT'S WORLD PANCREATIC CANCER DAY! Let's turn the world purple today! 🎗️📣🗣 Here's how you can join in:
💜 Put on your best purple!
📷 Take a picture (or 2 or 3)!
🏷️ Tag @PanCAN and #PanCANawareness
It takes all of us together to raise awareness for #pancreaticcancer! 💜
CancerGenomicsCloud retweeted
What a tour-de-force review of the biology, genomics, research ecosystem, and development of promising treatments for Neurofibromatoses (NF) by @brkorf at #CGCAnnual2022
CancerGenomicsCloud retweeted
Welcoming our keynote speaker at #CGCAnnual2022 Dr. Bruce Korf @brkorf explaining the genomics of #neurofibromatosis through his lenses of years of experience. For LGG board exam takers, I highly recommend checking out Dr Korf’s lectures! @CG_Consortium #cancergenomics
CancerGenomicsCloud retweeted
"Bioinformatics tools developed to support BioCompute Objects"
New #BioComputeObject Tools paper in @biocurator's #openaccess journal Database discussing #BCO on Cloud-based platforms: HIVE, Cancer Genomics Cloud (CGC) and @galaxyproject ,
academic.oup.com/database/ar…
#BioCompute
![Figure 3. User BCO training process.
The BioCompute training unit (1) introduced participants to the concept of BioCompute, (2) offered hands-on exercises with two genome analysis platforms (HIVE and CGC), (3) familiarized participants with a prominent literature resource (PubMed), (4) introduced the concept of data sources [through the OncoMX knowledgebase (https://www.oncomx.org/)], (5) described the process of finding a suitable publication with an associated open source pipeline, (6) introduced the JSON language as a suitable segue into training users on the BCO Portal (previously BCO Editor) and (7) provided users with a Q&A opportunity prior to final submission of BCOs to the precisionFDA BCO App-a-thon.](https://pbs.twimg.com/media/Ex9yoiTW8Aoj6Dd.jpg?name=orig)
ALT Figure 3. User BCO training process. The BioCompute training unit (1) introduced participants to the concept of BioCompute, (2) offered hands-on exercises with two genome analysis platforms (HIVE and CGC), (3) familiarized participants with a prominent literature resource (PubMed), (4) introduced the concept of data sources [through the OncoMX knowledgebase (https://www.oncomx.org/)], (5) described the process of finding a suitable publication with an associated open source pipeline, (6) introduced the JSON language as a suitable segue into training users on the BCO Portal (previously BCO Editor) and (7) provided users with a Q&A opportunity prior to final submission of BCOs to the precisionFDA BCO App-a-thon.
CancerGenomicsCloud retweeted
The first of many CWL-BCOs are under development! Check back here for updates and examples that incorporate BCO with #CommonWorkflowLanguage #CWL
CancerGenomicsCloud retweeted
In 1997, Prince Hitachi—the younger brother of the Japanese Emperor and a cancer researcher—met with @theNCI scientist Dr. Ira Pastan, who had collaborated with colleagues in Japan.
ALT A man in shirtsleeves points to an image on a flat computer screen while showing a man in a suit something
CancerGenomicsCloud retweeted
webinar starting in about an hour, slides definitely ready ;)
Happy to share my "human learning" talk on Tuesday. Will briefly cover challenges in training data scientists (& bioinformaticians); how we've leveraged NIH-funded platforms to train diverse users - spanning high school to post-doc; and what's worked best
buff.ly/3jbXJj1
CancerGenomicsCloud retweeted
As director of @theNCI, I am concerned that delayed and deferred cancer care will increase cancer mortality. The strong, steady progress we have seen the past three decades is at risk.
CancerGenomicsCloud retweeted
👋 academic twitter, please help me share - opportunity for folks at any university to drive heart, lung, blood, & sleep research.
@nih_nhlbi accepting apps for BioData Catalyst Fellows; supporting ambitious research & new tool dev. June 26th deadline biodatacatalyst.nhlbi.nih.go…
CancerGenomicsCloud retweeted
Thanks to funding from @cziscience, looking forward to making new @commonwl learning materials with real-world data from the global Personal Genome Projects and using the Arvados platform. #FOSS #FreeKnowledge #OpenScience
CancerGenomicsCloud retweeted
Excited to share our paper ~ we show that #HPV35 is of greater etiologic importance in African ancestry women, related to genetic variation of the virus ~ adding HPV35 to the #HPV vaccine would improve #cervicalcancer prevention in African ancestry women. pubmed.ncbi.nlm.nih.gov/3236…
CancerGenomicsCloud retweeted
Patient derived xenograft models from across PDXNet consortium (@jeffgenome @dennisadean2) reproducibly predict drug responses despite experimental protocol variability. Analysis and data on the @genomicscloud; Open-access article @CR_AACR
buff.ly/2KSfAeR
CancerGenomicsCloud retweeted
Get started with the Common Workflow Language (@commonwl) and #CWL reference implementation cwltool in our latest remote #training session with Stian Soiland-Reyes @soilandreyes & Robin Long. Register now!
📅 29 April
🕜13:00 – 15:30 BST
bioexcel.eu/events/reproduci…
CancerGenomicsCloud retweeted
Five years ago we released our first version of Seurat. Since then, its been extraordinary to watch the growth of this field and to be part of an uplifting, open, and collaborative community developing analytical tools for single cell genomics.
Try out 1st software release from my lab at @nygenome - Seurat: R toolkit for single cell genomics. Code, tutorials- satijalab.org/seurat
CancerGenomicsCloud retweeted
To help design a potential new #CommonWL feature, we are crowd-sourcing examples of non-toy workflows that use dynamic looping:
github.com/common-workflow-l…
#SciWorkflows
CancerGenomicsCloud retweeted
Our LDlinkR paper is online today in @FrontGenetics. LDlinkR is a new R package for rapidly calculating linkage disequilibrium statistics in diverse populations. Great work @tim_myers!
frontiersin.org/articles/10.…
#NCI_ITEB #rstats #LDlink #LDlinkR @NCIEpiTraining