@eeholm

I am a research scientist NOAA Fisheries and supporter of Open Science. All views my own.

eeholmes.github.io
Joined February 2008
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  • Followers284
87Media
World Fisheries Congress is in Seattle! Please join us Monday March 4th 2-5:30pm for an Open science panel and unconf to integrate collaborative and inclusive practices into education, workforce development, and community management. Come meet friends and share ideas.
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@gavin_fay @openscapes
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Looking for an easy way to search, download, or stream @NASAEarth science data in a few lines of code? earthaccess is the library for you! go.nasa.gov/3Fohmkn #xarray #Python #OpenScience #NSIDCDAAC #LPDAAC #CloudComputing #openscapes
True color image of Earth from space with earthaccess logo on the left and the text, "A Python Library for NASA Earthdata" in the foreground. The upper right corner features the openscapes logo, the National Snow and Ice Data Center logo, and the NASA logo.

ALT True color image of Earth from space with earthaccess logo on the left and the text, "A Python Library for NASA Earthdata" in the foreground. The upper right corner features the openscapes logo, the National Snow and Ice Data Center logo, and the NASA logo.

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More JupyterHub Geek Week. This piece covers the steps of setting up user authentication with GitHub teams. medium.com/@eli.holmes/setti… @ProjectJupyter This is a "manual" installation (no TLJH or Z2K), which I don't recommend, but was part of a learning journey.

Setting up GitHub authentication on a JupyterHub on a CentOS 8 server

This is a follow-up on my two CentOS 8 JupyterHub stories: setting up the JupyterHub and setting up https for the hub. You will need to…

medium.com
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More Geek Week: Setting up JupyterHubs. I am working on getting better at the steps by setting up these hubs in different ways. This piece covers the critical step of setting up https on a manual JupyterHub installation. medium.com/@eli.holmes/setti… @ProjectJupyter

Setting up https for a JupyterHub on a CentOS 8 server

This walks through how I set up https on the JupyterHub that I set up on a Azure CentOS 8.3 server in this story. I assume that you have…

medium.com
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Note this is part of a JHub learning journey for me. I suggest using The Littlest JupyterHub or Zero to Kubernetes. Also CentOS 8 is already end-of-life. I was trying to emulate installation on a bare metal server that happened to have CentOS 8 installed.
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I am working on getting more proficient at setting up JupyterHubs as a computing platform. Here is my latest learning journey. Setting up a hub on a CentOS 8 Linux server: medium.com/@eli.holmes/setti… @ProjectJupyter Thanks @openscapes mentors for the help!

Setting up a JupyterHub on Azure CentOS 8 server

This post will walk you through setting up a standalone (aka not Kubernetes) JupyterHub on a server. I am doing this on a CentOS 8 server…

medium.com
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Today, we concluded the 2-week #training Course & HackWeek on #MachineLearning based #Species Distribution Modelling." The participants visited the various labs of #INCOIS today & interacted with our scientists! We express our gratitude to @eeholm for facilitating the classes!
INCOIS, MoES
@incoismoes11 Sep 2023
Today, ITCOocean initiated a 2-week #training Course & HackWeek on #MachineLearning based #Species Distribution Modelling." We express our gratitude to @eeholm from @NOAAFisheries for facilitating the classes! Course Coordinators include @1nimitk and @TvsUdaya from #INCOIS!
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I had an amazing 2 weeks at INCOIS teaching 58 participants from across India, Bangladesh and beyond about skills for reproducible science, R, JupyterHubs, remote-sensing data and species distribution modeling. hackweek-itcoocean.github.io…
INCOIS, MoES
@incoismoes22 Sep 2023
Today, we concluded the 2-week #training Course & HackWeek on #MachineLearning based #Species Distribution Modelling." The participants visited the various labs of #INCOIS today & interacted with our scientists! We express our gratitude to @eeholm for facilitating the classes!
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Thanks to @2i2c_org and @ESIPfed for providing support for the JupyterHub. A fully provisioned platform for cloud-native geospatial analysis in R and Python really accelerated the learning and project development. This JHub will be a boon for future training and research.
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Co-organizers were Aditi Modi, Nimit Kumar, Swarnali Majumder, Sourav Maity, Smitha BR and Uday Bhaskar. With guest speakers Ben Best, Johnny Konjarla, Myranda Shirk, Minh Phan and Sanitha K. Sivadas.
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So excited to be back at INCOIS for my NOAA International Fellowship! @NOAAFish_NWFSC @NOAAFisheries
INCOIS, MoES
@incoismoes11 Sep 2023
Today, ITCOocean initiated a 2-week #training Course & HackWeek on #MachineLearning based #Species Distribution Modelling." We express our gratitude to @eeholm from @NOAAFisheries for facilitating the classes! Course Coordinators include @1nimitk and @TvsUdaya from #INCOIS!
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Geek Week: More Docker for R users. Today I show you how to open rocker/rstudio with Podman on your local computer. Podman runs essentially the same but changes the user name from rstudio to root. youtu.be/Ll4apwgBs_g #rstats

Geek Week: Docker for R users: 2d-Running rocker/rstudio with Podman

In this series of mini lectures on Docker for R users, I'll show yo...

youtube.com
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If you don't notice that it does this, you will get "user/password" errors when you try to log in RStudio server and you'll bang your head for hours trying to solve the problem. But there is no problem, just use root/password instead of rstudio/password.
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Can't I just pass in --env USER=myuser ? Nope, Podman will delete whatever you pass in and replaces it with "root". Note you are only root in the container; there container itself is not running as root (unlike Docker containers in the default config).
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