@dyneofdata

Vote🗳️. Willing and happy to talk about: sled dogs, graduate student mental health and burnout, 3D genome, and @yourewrongabout episode on Kitty Genovese

dyneofdata.github.io
Joined July 2018
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Excited to share our new pre-print interpreting the target genes and downstream pathways of regulatory variation in the 3D genome. With @espjunha @sroyyors @shiluzg @jmschreiber91 et al. Special thanks to @dyneofdata. Check it out 👇👇 biorxiv.org/content/10.1101/…

Leveraging epigenomes and three-dimensional genome organization for interpreting regulatory...

Understanding the impact of regulatory variants on complex phenotypes is a significant challenge because the genes and pathways that are targeted by such variants are typically unknown. Furthermore,...

biorxiv.org
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And if you are interested in UW Biomedical Data science, drop by too!
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I had a blast recording my first podcast ever! Thank you @jmschreiber91 and @bioinfochat for having me on and nerding out over chromatin architecture 🧬 and matrix factorization
Jacob Schreiber@jmschreiber9123 Jun 2021
In the latest episode of @bioinfochat, I talk with @dyneofdata about her latest method, GRiNCH, for identifying genomic regions that cluster together in 3D space and then stealing their presents to put a sad look on their face. Check it out! bioinformatics.chat/grinch

3D genome organization and GRiNCH with Da-Inn Erika Lee

In this episode, Jacob Schreiber interviews Da-Inn Erika Lee about data and computational methods for making sense of 3D genome structure. They begin their discussion by talking about 3D genome...

ro-che.info
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Da-Inn Erika Lee retweeted
Jian Ma
@jmuiuc10 Feb 2021
Please help spread the word about our Lane Postdoctoral Fellowship program at Carnegie Mellon. Deadline March 1👇🏽
Ray and Stephanie Lane Computational Biology Dept.@CMUCompBio10 Feb 2021
Are you a recent/soon-to-be PhD recipient searching for a postdoc opportunity in computational biology? Consider the Lane Fellow Program @CMUCompBio! We are accepting applications through March 1. For program details and to apply: cbd.cmu.edu/news/2021/cbd-ac…
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Da-Inn Erika Lee retweeted
Genome Biology@GenomeBiology13 Jan 2021
Study of the evolution of gene regulatory networks in African cichlids, from @TK_mehta, @sroyyors, @ScienceisGlobal and co. Based on RNA-seq data from six tissues in five species, they find rewiring of regulatory networks between species eg in opsins genomebiology.biomedcentral.…
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My advisor @sroyyors offering her insight and advice! 👏
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Science answers: how do dogs know other dogs are dogs? @BlairBraverman #uglydogs Thank you @SusieGCG for always sensing and sending me what I need in my life
Benjamin Katz@DrBenKatz10 Dec 2020
Replying to @DrBenKatz
Every intro to cognitive psychology course has at least one chapter where we ask how people know that dogs are dogs - after all, they look so different from each other. This research one-ups our question and asks: HOW DO DOGS KNOW THAT OTHER DOGS ARE DOGS??
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I'm just going to do these myself because grownass woman who loves science also deserves fun 😉
Dr. Amanda Charlesworth 🏳️‍🌈@AGCharlesworth9 Dec 2020
I made some little games for my lab mates kids' using @BioRender and I wanted to share with you all! Feel free to print them and give them to kiddos who love (or who you are slowly convincing to love) science! Happy Holidays everyone!
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I’m ashamed I only learned about @timnitgebru’s work after her firing. Thank you @math_rachel for pointing me to @timnitgebru’s high-impact body of work on ethical AI (and @yourewrongabout for teaching me that you lose sight of a person by focusing on the spotlight around her) 1/
Rachel Thomas
@math_rachel3 Dec 2020
I have long admired @timnitGebru for her brilliance, moral courage, clear voice in speaking up for what is right, & influential scholarship. It is truly terrible that Google would do this. In this thread, I want to share some of Timnit's work I love xitter.cf/timnitGebru/status/133…
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6/ I’m training to be a computational biologist. Based on @_KarenHao’s summary of the paper that led to @timnitgebru taking a stance, this work also speaks to ethical concerns in my field, particularly for large deep models like AlphaFold. technologyreview.com/2020/12…
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It’s a (morbidly) fun exercise to read through the article and think about which ethical concerns would be transferable to AlphaFold, or whatever model you’re working on. I recommend it as a light Saturday morning family activity ;) I look forward to reading the full paper. 7/7
Black American Sign Language? What You Know About That? Meet Nakia Smith a.k.a. Charmay (@realcaunsia). She's the 4th deaf generation of five generations, and she is here to inject some knowledge in our veins about BASL and its rich history. Watch & learn from this young queen!
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I am recruiting several BS/MS/PhD #bioinformatician #datascientists to join my group. Skills in #programming #omics #analysis + experience in #research preferred. #WFH until #inperson work is resumed. Official opening links 2 follow. DM me for details. @UPMCHillmanCC @PittTweet
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I feel so seen and personally attacked at the same time
Hunch Curio@tropicsentence29 Nov 2020
My model won't converge but at least I've narrowed down the problem to either my code or my understanding of this topic
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Da-Inn Erika Lee retweeted
Caitlin Hudon
@beeonaposy25 Nov 2020
$ git show head
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Da-Inn Erika Lee retweeted
Caitlin Hudon
@beeonaposy13 Mar 2018
$ git checkout my_branch
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