@dkuo

scientist studying biology with computers

 Seattle, WA
Joined March 2008
  • Tweets1.9K
  • Following1.1K
  • Followers407
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dkuo@dkuo
8 May 2019
Our paper on RA Macrophages is now online at @ScienceTM! stm.sciencemag.org/content/1… Very grateful to mentors at @HSpecialSurgery > Ivashkiv and Donlin Labs and @csatet > @gxr @gxrlab; collaborators @FanZhang_Jessie and @soumya_boston and many others
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Congrats @akkah21 @gxr and team!
Stephen Turner 🦋 @stephenturner.us@strnr
15 May 2024
Indexing All Life's Known Biological Sequences biorxiv.org/content/10.1101/… metagraph.ethz.ch/search
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Are you wrestling with this missing data pattern? While single-cell experiments provide deep cellular resolution within a single sample, bulk experiments have sequenced more (rare) diseases, perturbations, and patient populations. BuDDI is here to help! biorxiv.org/content/10.1101/…
large square is broken into four subsquares, with the bottom right subsquare missing. the rows represent a technology and the columns represent pre- or post-treatment. The squares indicate that there is information for bulk and single-cell pre-treatment, but only bulk post treatment.

ALT large square is broken into four subsquares, with the bottom right subsquare missing. the rows represent a technology and the columns represent pre- or post-treatment. The squares indicate that there is information for bulk and single-cell pre-treatment, but only bulk post treatment.

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Aaron Rodgers entering his darkness retreat again
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A rewarding team effort to define how T cell activation by checkpoint therapy can result in an INDUCIBLE HUMAN AUTOIMMUNE CONDITION - which resembles rheumatoid arthritis.
Science Immunology@SciImmunology
28 Jul 2023
A new study by @SingarajuAnvita @KB_PhD @Deepakarao @Donlinlab and colleagues identifies a T cell population as a reason for why some types of immune checkpoint inhibitor immunotherapies can cause arthritis to emerge in some patients. 📄: scim.ag/3wO
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🧬💻🔥 We are excited to launch #CuratedAtlasQueryR! millions of cells at your fingertips. A thread 🧵. The harmonized and reannotated #CELLxGENE #singlecell human #atlas can be explored and retrieved as #SingleCellExperiment. Please RT! -> stemangiola.github.io/Curate…
Cartoon of the structure, content and use of the CuratedAtlasQueryR API. It uses #CELLxGENE data, #DuckDB infrastructure, #tidyverse API

ALT Cartoon of the structure, content and use of the CuratedAtlasQueryR API. It uses #CELLxGENE data, #DuckDB infrastructure, #tidyverse API

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This paper is finally out in eLife! The process of getting published was exhausting, but I feel refreshed after submitting to eLife. It got very insightful reviews you can all enjoy! Still working on a response, but since it's eLife you can see them now! elifesciences.org/reviewed-p…
Natalie Davidson 🛼@n_rose_d
22 Jun 2021
Happy to share our new @bioarxiv pre-print “Analysis of scientific journalism in Nature reveals gender and regional disparities in coverage” We analyzed the text of 22,001 news articles to see if we observed any disparities (spoiler: we did) biorxiv.org/content/10.1101/… 🧵 1/18
barplot containing the number of nature news or research articles from 2005 to 2020. Each bar for a single year is stacked to show the breakdown by article type. The most frequent type is "news" followed by "research". The total number of articles varies from over 2000 in 2005 and steadily decreasing over time, with more than 1500 articles in 2020.

ALT barplot containing the number of nature news or research articles from 2005 to 2020. Each bar for a single year is stacked to show the breakdown by article type. The most frequent type is "news" followed by "research". The total number of articles varies from over 2000 in 2005 and steadily decreasing over time, with more than 1500 articles in 2020.

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Our recent work on sequence-to-graph alignment in metagenomics using longer inexact seeds biorxiv.org/content/10.1101/…

Aligning Distant Sequences to Graphs using Long Seed Sketches

Sequence-to-graph alignment is an important step in applications such as variant genotyping, read error correction and genome assembly. When a query sequence requires a substantial number of edits to...

biorxiv.org
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Congrats to my former ⁦@Harvard⁩ bandmate ⁦@CarolynBertozzi⁩ on her ⁦@NobelPrize⁩ in chemistry! We won the Ivy League Battle of the Bands in 1986 with our rockin’ group ‘Bored Of Education’, with her on keyboards & me in spandex. news.stanford.edu/2022/10/05…
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cc @kwangbom ;)
Lars-Johan Larsson@LarsJohanL
3 Jul 2022
This blue Lobster was caught off the coast of Portland yesterday and returned to the water to continue to grow. Blue lobsters are one in two million.
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Barcodes, barcodes everywhere @carroll_jono
Paul Nettle ⌨️🎱🧙‍♂️@CoderMiddy
29 Jun 2022
This deck of cards has a bar code printed on the edge of each card. Scanning these bar codes would reveal where every card is (or isn't - if cards are missing.) Think card magic. 1/
A deck of cards with digital marks printed on the edge of each card.

ALT A deck of cards with digital marks printed on the edge of each card.

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Thought this was about @JuliaLanguage ....
hbo max fka
@streamonmax
10 Jun 2022
For your consideration - #Julia - the Max Original Comedy Series that Decider raves is “Heartwarming & Delicious”

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Do you remember when you joined Twitter? I didn't until Twitter reminded me. #MyTwitterAnniversary
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Wordle 200 5/6 🟩⬛⬛🟨⬛ 🟩🟨🟨⬛⬛ 🟩⬛🟨🟨🟩 🟩🟩⬛🟩🟩 🟩🟩🟩🟩🟩
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Wordle 199 4/6 ⬛⬛⬛⬛🟨 ⬛🟨🟨⬛⬛ ⬛🟨⬛🟨🟨 🟩🟩🟩🟩🟩
Very happy to announce the upcoming International Genome Graph Symposium, July 3-7 in Ascona, CH. With a very exciting lineup of keynote speakers, we are looking forward to inspiring discussions at a unique location. Pre-register now at iggsy.org. Please RT #iggsy22
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Finally out in @NatureRevGenet: Navigating the pitfalls of applying machine learning in genomics! go.nature.com/3D55JuZ w/ @seawhalen et al. Our key point: you MUST evaluate your models in the same setting you want them to be used or they might not actually work in practice.
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I was telling my students today about how Derrick Bell left Harvard Law because they refused to hire any women of color. I asked my class if they knew who was the first woman of color they hired. I tried to keep a straight face then my TA BUST out laughing. 🤣🤣🤣
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We launched our lab website over the weekend: lehmannlab.org/ Check it out especially the upcoming open PhD/Postdoc opportunities! #hiring #AcademicTwitter Also big thanks to our webmaster (@joyceykao) for designing the lab logos and building the website!
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The lab is open for business and we are #hiring!!! If the analysis and method development of multi-modal biomedical data with a focus on oncology sounds interesting to you, check out the ad and apply online: bit.ly/LehmannLabPostDoc #MachineLearning #CancerResearch
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The COVID-19 Virus Explained phdcomics.com/comics.php?f=2…

The COVID-19 Virus Explained

Link to phdcomics.com

phdcomics.com
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