@ciyer

software engineer, seduced by data https://xitter.cf/t.co/2LDTeKFqfc

 Zürich, Switzerland
illposed.com
Joined April 2008
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Most structures in the PDB report one set of coordinates. The experimental data behind them, in both X-ray crystallography and cryo-EM, is produced by an ensemble. New work recovers that hidden signal at scale in over 60,000 structures. thestacks.org/publications/q…
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This publication format, with both inline code and commentary from authors and readers is so awesome and needed to be adopted yesterday
Prism Science@PrismScienceOrgAug 11
Most structures in the PDB report one set of coordinates. The experimental data behind them, in both X-ray crystallography and cryo-EM, is produced by an ensemble. New work recovers that hidden signal at scale in over 60,000 structures. thestacks.org/publications/q…
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Today, we’re thrilled to announce a partnership between @AsteraInstitute and @NSF on the Programmable Cloud Laboratories Test Bed Initiative. The initiative will enable automated experimentation, standardized data generation, and rich metadata capture. We see it as a great opportunity to produce scientific data that is reproducible and AI-ready from the start. This is a natural fit given Astera's long-standing commitment to data-first and utility-focused open science. We’re excited to contribute funding and support to help compound the public benefit of this major federal investment! astera.org/astera-partnering…

Astera Partnering with the National Science Foundation to Support Open Science

Today, the National Science Foundation (NSF) announced a partnership with the Astera Institute related to the first round of investment in building a national network of automated laboratory infras...

astera.org
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We’re awarding at least 5 $10K contracts to grad students near the point of graduation. 1-pagers due August 21. Full details and link to apply: astera.org/hidden-science-co…

Hidden Science Competition

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Our recent essay competition surfaced a theme: a lot of useful science (null results, abandoned directions, datasets, protocols) is never shared. Why wait? Our Hidden Science Competition is awarding life sciences grad researchers $10K to publish it. More below 👇
Astera Institute
@AsteraInstituteJul 1
We recently launched an essay competition for which scientists described structural problems they run into. With nearly 200 submissions, we decided to give out 8 awards, instead of 3. A quick summary here 👇 1 / 5
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Love all the AI-native initiatives for research sharing I’m starting to see pop up across the ecosystem. If you’re building in this space, I’d love to hear from you as there may be some synergies or opportunities across our open science efforts at @AsteraInstitute
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We’re still looking for a lot of folks for Open Science at Radial (within the @AsteraInstitute ecosystem) including a data steward, operations associate, as well as an engineer and product manager for the Stacks (thestacks.org/) to work on our publishing platform. If you think any of these roles are a good fit for you, apply now! astera.org/careers/

The Stacks

An experimental new publishing platform. Browse the latest research.

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Replying to @AsteraInstitute
@AsteraInstitute is launching an essay competition to identify systemic bottlenecks to today's science. We're looking to hear from currently practicing scientists first-hand: what is broken? Deadline is May 1st. More below 👇
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We're expanding our life sciences work through a new division Radial led by @beckypferdehirt as CEO. Becky be work closely w @PracheeAC @seemaychou to help lead experiments with infrastructure and approaches to funding, enabling, and publishing science 1/
STAT
@statnewsMar 11
A new nonprofit called Radial is launching with at least $500 million to modernize the scientific process for the AI era. trib.al/yfGSUvt

New nonprofit launches with at least $500 million to modernize scientific process for AI era

A new nonprofit called Radial is launching with at least $500 million to modernize the scientific process for the AI era.

statnews.com
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This is Helene Meisler You might have noticed my account was hacked by some crypto spammer. Getting it back seems unlikely. You can now find me over on Bluesky at hmeisler. If you could could RT this so that the word gets out that Dune is not me, I would really appreciate it
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We're expanding the residency program @AsteraInstitute and need someone to lead our incubator for founders obsessed w solving hard, impactful problems using science. Know how to spot talent, diligence ideas, and enable entrepreneurs? Please RP/apply here: jobs.ashbyhq.com/astera/f0a2…
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Data has long been undervalued as key asset in the life sciences that should be aggressively shared and compounded on. Our Open Science program @navigationfund is investing big on this: navigation.org/grants/open-s… 🧵
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How to predict customer churn with survival analysis in Python? Join colleagues from @SDSCdatascience Center to learn “who will stay and who will go” during #AMLD2022 at #epfl on March 26th. Quick, registration closes soon: lnkd.in/eQQ26KhK #datasciencewithpython #AI

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If you're excited about working on #opensource tooling for #openscience, come join our team @SDSCdatascience building the #renkuplatform! We are looking for a cloud engineer for our #devops activities. Position open @ETH and @EPFL: jobs.ethz.ch/job/view/JOPG_e… recruiting.epfl.ch/Vacancies…
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If you are teaching political theory or democratic theory class and have family / friends in Ukraine and need a break, I will sub for you teaching remotely. DM me. #PoliSciTwitter. I’m following great example of my colleague @EricaChenoweth here.
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We are so excited to announce the latest Renku release, 0.9.0 🎉 The major upgrades are: 🤩 new UI as default, 🍴 forking directly from Renku, ⚡ improved session experience, 🗄️ support for marquee images on datasets. Check it out! bit.ly/3arCzKR bit.ly/2YuWp5d
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We are happy to announce that @psich_en will host the 3rd @SDSCdatascience office, after @EPFL_en and @ETH_en, to develop a new initiative in #DataScience for Large Scale Infrastructures bit.ly/3aIYyxh @ETH_Rat @MartinVetterli @Joel_Mesot @m_hengartner
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As 2021 begins, we looked back at our first 15 meetups. We talked about generic tools, publication platforms, maps, the grammar of graphics... we wrote some code, shared our favorite visualizations, and many other things! Here is a little digest: blog.interactivethings.com/t…

The Beginnings of the Data Visualization Zürich Meetup

In June 2019, we started the Data Visualization Zürich meetup with a fundamental question: Why is data visualization so important? Over…

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if you’re interested in breaking news graphics, here’s a roundup thread of how different outlets covered yesterday’s Capitol insurrection (collected this morning)
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Fantastic talk by @rokstars at #HarvardDataFest about Renku including a surprise demo of the new integration with @dataverseorg! Docs at renku.readthedocs.io/en/late…
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