@catch_me_coding

Catch me coding research software #RSEng

Joined March 2018
  • Tweets175
  • Following399
  • Followers181
17Media
Do you like to code as much as you like doing research and writing papers? I’m delighted to share my experience in my favorite #altac career path: @ResearchSoft-ware engineering! Take a listen or AMA 🎧 @us_rse #RSEng #AcademicChatter #AcademicTwitter #phdchat #PhDVoice
Hello PhD@HelloPhD4 Apr 2022
Do you love coding and science? Do you love learning about new careers? Join us as we explore Research Software Engineering #RSEng and discover if it might be a good fit for you (or helpful for your research)! @us_rse hellophd.com/2022/03/172-res…
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Catch me presenting an update on the state of the Jupyter4Science site, which was one of the outcomes of my @BetterSSw fellowship. See the latest blog post at jupyter4.science/posts/scipy…
SciPyConf@SciPyConf11 Jul 2024
Amazing posters at the poster session at #SciPy2024 🙌
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I was watching Lord of the Rings last night and realized there are many parallels with academia! A thread 🧵👇
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Appreciation post: This summer I’ve been mentoring these student interns funded by the Better Scienctific Software fellowship. They are incredible and I am so energized by their enthusiasm and hard work! I’m so grateful for the opportunity to improve my m…lnkd.in/eMQrTRzu

Appreciation post: This summer I’ve been mentoring these student interns funded by the Better...

Appreciation post: This summer I’ve been mentoring these student interns funded by the Better Scienctific Software fellowship. They are incredible and I am so energized by their enthusiasm and hard...

linkedin.com
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This summer I’ve been mentoring these student interns funded by the @BetterSSw fellowship. They are incredible and I am so energized by their enthusiasm and hard work! I’m so grateful for the opportunity to improve my management and teaching skills with these wonderful humans :)
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I just bought my t-shirt which will help raise funds for the inaugural @us_rse '23 Conference. I'm excited to announce that there is a women's cut! Now I can show off my RSE pride and be comfortable doing so 💁‍♀️customink.com/fundraising/us…
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Isn’t it beautiful?? Oh wait, it’s a little hard to see in icon size … 🔍🔍 … how about now 🏳️‍🌈🏳️‍⚧️
US-RSE | @us_rse@fosstodon@us_rse1 Jun 2023
You may have noticed, we've changed our logo for Pride Month! 🏳️‍🌈 Read more about US-RSE's planned activities here: us-rse.org/2023-06-01-pride-…

US-RSE Celebrates and Reflects on Pride this June

United States Research Software Engineer Association

us-rse.org
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An interactive poster? Why didn’t I think of that?? Amazing #jupyternotebook use-case that I’ll be pitching alongside data dashboards and web apps 👏👏
James Bednar@JamesABednar23 May 2023
If you have any interest in pushing the boundaries for how science can be communicated, check out Jacob Barhak's fully interactive posters based on @HoloViz_org tools: jacob-barhak.github.io/COVID… jacob-barhak.github.io/Unit_… Way more powerful than trying to read a static PDF paper!
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Measure of community success: Ask your members, "Have you made any close friends as a result of this community?"
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Spread the word! Notebook submissions are due May 8 and we are so excited to see how you’re using them. lnkd.in/g8z45bJp

Spread the word! Notebook submissions are due May 8 and we are so excited to see how you’re using...

Spread the word! Notebook submissions are due May 8 and we are so excited to see how you’re using them.

linkedin.com
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Can’t wait to try this out! A very interesting alternative to the ipywidgets ecosystem
Posit PBC@posit_pbc27 Apr 2023
Shiny for Python is now generally available! 🎉 With Shiny, you can create interactive web apps without HTML/CSS. Now, you can combine Shiny's reactivity with #Python's vast resources for endless possibilities. Check out new resources and learn more: posit.co/blog/shiny-for-pyth…

Shiny for Python is now generally available

posit.co
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Technical question for @pyOpenSci @rOpenSci @posit_pbc folks. Do you have a guide on how to get started implementing identical python/R libraries with a shared C++ backend? looking for examples less complicated than the amazing github.com/apache/arrow #Python #RStats #OpenScience

GitHub - apache/arrow: Apache Arrow is the universal columnar format and multi-language toolbox for...

Apache Arrow is the universal columnar format and multi-language toolbox for fast data interchange and in-memory analytics - apache/arrow

github.com
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Can’t wait to start reviewing all the awesome computational notebooks we’re going to get 💜 come join us!
US-RSE | @us_rse@fosstodon@us_rse19 Apr 2023
📣🚨Call for reviewers for our VERY FIRST CONFERENCE #RSEng #USRSE2023 You can help other RSEs by giving them feedback on their submissions! Please fill out this form by May 1st forms.gle/kx1d4qq9iVkLHB21A Details in pics 1/2
The first ever US-RSE Conference (US-RSE’23) is happening October 16-18, 2023, in Chicago, IL. The theme of this year’s conference will be “Software Enabled Discovery and Beyond.”We are looking for volunteers to be program committee members to assist in the reviewing process. If you are interested in becoming a reviewer, please fill out the Program Committee Interest Form by May 1, 2023. Each reviewer will be assigned no more than 2 to 4 submissions total (depending on submission type) with about one month time to complete the reviews.

ALT The first ever US-RSE Conference (US-RSE’23) is happening October 16-18, 2023, in Chicago, IL. The theme of this year’s conference will be “Software Enabled Discovery and Beyond.”We are looking for volunteers to be program committee members to assist in the reviewing process. If you are interested in becoming a reviewer, please fill out the Program Committee Interest Form by May 1, 2023. Each reviewer will be assigned no more than 2 to 4 submissions total (depending on submission type) with about one month time to complete the reviews.

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Submissions now open for our workshop on #RSEng in @escience! Theme: sustainable RSE ecosystems For more info, please see us-rse.org/rse-escience-2023… Pls RT! @IanCosden @suttonkoeser @catch_me_coding @JeffCarver32 @nasireisty
Screenshot of Slack messagr from Miranda Mundt: US-RSE is organizing a workshop as part of the IEEE eScience 2023 conference (this year to take place, IN PERSON, in Limassol, Cyprus): RSEs in eScience. The theme of this workshop is sustainable RSE ecosystems, encompassing both the role of RSEs in sustainable eScience and making the RSE ecosystem itself more sustainable. We intend for this workshop to raise awareness of the concept of research software engineers and research software engineering (RSEng), as well as to provide an opportunity for RSEs and those interested in RSEng to talk about issues and solutions. Anyone involved or interested in RSEng is welcome to attend. The call for talk abstracts is now open. Important Dates Submissions open: Monday, March 20, 2023 Abstract submissions due: Friday, June 30, 2023 Notifications sent: Tuesday, August 1, 2023 Program finalized: Tuesday, August 15, 2023 Please feel free to contact me or wg-outreach@us-rse.org with any questions.

ALT Screenshot of Slack messagr from Miranda Mundt: US-RSE is organizing a workshop as part of the IEEE eScience 2023 conference (this year to take place, IN PERSON, in Limassol, Cyprus): RSEs in eScience. The theme of this workshop is sustainable RSE ecosystems, encompassing both the role of RSEs in sustainable eScience and making the RSE ecosystem itself more sustainable. We intend for this workshop to raise awareness of the concept of research software engineers and research software engineering (RSEng), as well as to provide an opportunity for RSEs and those interested in RSEng to talk about issues and solutions. Anyone involved or interested in RSEng is welcome to attend. The call for talk abstracts is now open. Important Dates Submissions open: Monday, March 20, 2023 Abstract submissions due: Friday, June 30, 2023 Notifications sent: Tuesday, August 1, 2023 Program finalized: Tuesday, August 15, 2023 Please feel free to contact me or [email protected] with any questions.

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Congratulations to Moumita Tabassum on her successful PhD defense! Yea, Dr. Tabassum! "Blocks-Based Programming for Visually Impaired Children" @alabama_cs @bamaengineering @UofAlabama @cs4alabama @AlabamaSTEM @ECEP_CS @csforall @AccessCompUW @AlabamaCsta @csteachersorg
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Help! I’m looking for an article that describes best practices for conda environment files 🔎 Specifically, I want something that explains how to find the balance between listing the exact package versions and listing no version at all. Do any of my #RSE s have a link to share?
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Thinking about submitting a proposal for a workshop / BoF / tutorial at our FIRST CONFERENCE?! 😎 📣 The deadline has been EXTENDED to April 4, 2023! Check the website for more details! us-rse.org/usrse23 RTs appreciated @catch_me_coding @danielskatz et al

US-RSE'23

The first US-RSE Conference ever!

us-rse.org
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📢📢📢Reminder that the Workshop / Birds of a FEather / Tutorial deadline for US-RSECon'23 is March 20, 2023! That's two weeks, all! us-rse.org/usrse23/participa… RTs appreciated! @danielskatz @catch_me_coding @nasireisty @IanCosden @sandragesing @maimonecr

Participate

The first US-RSE Conference ever!

us-rse.org
US-RSE | @us_rse@fosstodon@us_rse16 Feb 2023
🚨🚨 It's happening!!! 🚨🚨 Submissions for the first @us_rse Conference are open: us-rse.org/usrse23/participa… Chicago, Oct. 16-18. This year's theme: “#SoftwareEnabled Discovery and Beyond.” #RSEng #reproducibility #researchsoftware #Engineering Please RT!

Participate

The first US-RSE Conference ever!

us-rse.org
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What biology journals now enable integration of a Jupyter Notebook of code and dynamic plots etc. into the paper? @eLife does it, right? Any others?
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How cool is my roommate? Very
embryo project@embryoproject1 Mar 2023
Dodo birds? Woolly mammoths? Paris Hilton? The CIA?! Check out the recent piece on de-extinction from @ConversationUS, co-authored by the Embryo Project's own Managing Editor Risa Aria Schnebly (@RisaAria_). bit.ly/3Y5ilNa Image by Jebulon via Wikimedia Commons
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The more I read about the early history of bioinformatics, the more I realize that none of our cyberinfrastructure problems are new 1/3
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“Precedence for such large scale cooperative efforts have already been set in basic physics and other areas of science” ~ Lee Lusted talking about the need to establish biomedical computational research centers in 1960, before such a thing existed
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“Databases do not inspire” ~ Margaret Dayhoff who was trying to sustain funding for her highly successful protein sequence database in 1981
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