Computational lab of Personalized medicine. Neuroimaging and more @AGH_Krakow and @NeurotechX-KRK

Krakow
Joined June 2021
Behold, with the help of vibe coding I managed to put together an adjustable per month cortex-#EEG electrodes-tractography for infant and to connect it with LORETA sensor-to-source reconstruction, and my own effective connectivity library. Please test it! github.com/alecrimi/infantco…
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What do you think of our Recurrent #NeuralNetworks based on dendritic computation? For time series prediction with long horizons (tested on Lorenz #attractor and #epilepsy #EEG) it performs better than #LSTM and #GRU link.springer.com/article/10…
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New paper out on #RNN with Binds group from @unipa_it and @neurotechx Berlin "DIRU: Dendrite-Inspired Recurrent Units for Learning Chaotic Dynamics and Neonatal #Epilepsy Time Series" link.springer.com/article/10… Code: github.com/alecrimi/DIRU Data: #EEG of Helsinki infant hospital
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The #surgeon has the #3D scan. The surgeon has the live X-ray. What nobody has is the transform between them. This open-source AI lines up a live #Xray with a patient 3D CT scan, with submillimeter accuracy Nature paper: nature.com/articles/s41586-0… Main code: github.com/eigenvivek/xvr
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#AR for the poor! A #brain🧠3D model with connectome in it from the paper, docked with just javascript to the poster itself (printed in B&W with coffee stains😄), no app, nothing fancy. But the model is 15MB, too much for my shitty phone. Help welcome alessandrocrimi.com/ar2/inde…
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For #genomics #datasets, I often use these 4 portals: 🧬TCGA - cancer.gov/ccg/research/geno… 🧬DepMap - depmap.org/portal/ 🧬1000 Genomes - internationalgenome.org/ 🧬recount3 - rna.recount.bio/ Are there better resources you use for genomics datasets? What am I missing?
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Seen this? What if we could understand how scientists move through the work, not just what is published? 🤖🔬 Transfyr is using #AI to study scientific workflows and movements, helping uncover patterns that can make research more transparent and reproducible. What do you think?
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Brain&More lab @AGH_Krakow retweeted
1/3 Conscious AI and Biological Naturalism. A veeery loooong time in the making, but I'm happy to say that the full collection is now out in @BBSJournal 🔥 I deeply thank all commentators - of fifty commentaries! - for their wise, broad, and deep opinions on this critical topic. I also thank them for their saintly patience. 🙏🏽 I remain highly skeptical about the prospects for conscious AI (for silicon digital systems), but I've learned an enormous amount from the privilege of engaging with these commentaries. Hands down one of the most rewarding experiences of my professional life. My hope is that - whether you agree with me or not - having such a diversity of views collected in one place will serve a useful resource for discussions about consciousness and AI. The original target article is available here: cambridge.org/core/journals/… My response "The stuff matters: consciousness, computation, and biology" was published just now, and is here: cambridge.org/core/journals/… And the set of 50 commentaries are collected here: cambridge.org/core/journals/… Unfortunately these are not open access. I will try to remedy that, at least for the target & response. FWIW there's a more accessible version of my view on the topic here in @NoemaMag noemamag.com/the-mythology-o… and also a short @TEDTalks from earlier this year ted.com/talks/anil_seth_why_…
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#brain stuff 🧠: Historical day, @kevinwkelley and colleagues created a xenocortical mice where human organoids grow to occupy most of mouse cortex nature.com/articles/s41586-0…
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Brain&More lab @AGH_Krakow retweeted
Can AI spread like a virus and erode cognitive autonomy? Our new paper models how LLM adoption can cross tipping points, triggering runaway dependence and tech lock-in, suggesting routes to "cognitive immunization". arxiv.org/abs/2609.03344
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New paper out 🧠 1. We showed that an #EEG #neuromorphic classifier achieves comparable GPU results using 1/3 of electricity 2. 1/f slope (E/I inbalance) was among top features, and we showed the value of it also with #Alzheimer neurosimulations with #Nest sciencedirect.com/science/ar…
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New preprint out! With Christian and Tina from AIMS Ghana we have developed: "Hierarchical Detection of 👶#Neonatal 🧠 #Brain Pathologies Using a Two-Stage Deep Learning Framework from Magnetic Resonance Imaging" papers.ssrn.com/sol3/papers.…
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Brain&More lab @AGH_Krakow retweeted
Join the next @BodyBrainWaves: 4day summer school + 3day conference in Palermo, #Italy Focus: modulatory role of #body-#brain interactions on #cognition Stay tuned for an exciting #scientific program + #cultural (and #gastronomic) tours The call for applications are now open
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Thank you @BusInsiderSSA for the kind words:africa.businessinsider.com/l… I appreciate that you digged into my past not just the book
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Beyond representational alignment with 🧠 #brain-guided language models 🤖#LLMs for robust reasoning nature.com/articles/s42256-0… or arxiv.org/abs/2606.11893 Data: openneuro.org/datasets/ds003… Code: github.com/pkuxmq/Brain-guid…
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I need your help: I will launch soon my textbook for Italian students about computational #neuroscience. Which cover? Left or Right?
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Brain&More lab @AGH_Krakow retweeted
Perception - The thalamic rhythm (TR)/ loop (exec/ def mode) = temporal synch/ phase & data bus. Each epoch, TR modulation fires millions of generalised engrams, the sum/ cascade represents your current state of mind. ALL mems are available, just a quick phase change away.
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How does the spinal cord generate walking? The spatial structure of the network of spinal interneurons forms the basis of the generation of movement nature.com/articles/s41467-0…
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Frugal #innovation is not dead, long life to frugal innovation
This kid Levin Paulose from Kerala is a genius. His inventions are brilliant. Let's Make him famous. It's so heartwarming to watch him helping his mother with automation. I would love to meet him one day. Inspiring !!! #FI
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🧠Spike trains travelling everywhere: 📈📈📈 "Neural traveling waves in cortex: Network mechanisms and potential roles in neural computation" cell.com/neuron/fulltext/S08…
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