@biothingsapi

Making High Performance Data APIs in Biology. Provide an SDK to build APIs like @mygeneinfo @myvariantinfo

biothings.io
Joined April 2015
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  • Followers138
19Media
Now you can easily find sets of genes involved in #GeneOntology processes, diseases and more with our new @mygenesetinfo API. Try it out at mygeneset.info

My Geneset

A website and API to collect, save, and share genes

mygeneset.info
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Soft launch of our brand-new MyGeneset.info, a web toolset for sharing functional gene sets in all species with programmatic #API access. A joint work of @vincerubinetti @ravila_4 & the @biothingsapi team of @GreeneScientist & @chunleiwu labs!

My Geneset

A website and API to collect, save, and share genes

mygeneset.info
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Our new SDK release comes with support for both #elasticsearch 7 and 8. Learn more here: pypi.org/project/biothings/

biothings

a toolkit for building high-performance data & knowledge APIs in biology

pypi.org
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New BioThings SDK #pypi package released with support for #python 3.9, 3.10 and a lot of other improvements! pypi.org/project/biothings/

biothings

a toolkit for building high-performance data & knowledge APIs in biology

pypi.org
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The @myvariantinfo talk will be the last talk of the Wednesday #BOSC2022 session on #DataAccess and #visualization
MyVariant.info@myvariantinfo11 Jul 2022
Interested in the latest developments with MyVariant.info? Our very own @YaoY87 will be giving a talk at #BOSC2022 / #ISMB2022 on Wednesday (Session 3a) open-bio.org/events/bosc-202…
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We would like to thank the teams at @gisaid @cvisb @scrippsresearch @biothingsapi for making this possible, our funders @niaidnews @cdcgov @data2health, & the thousands of organizations & individuals around the world who share data to fight the pandemic.
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BioThings API retweeted
MyGene.info@mygeneinfo20 Oct 2021
New #preprint on the @biothingsapi SDK to build your own RESTful APIs from the @chunleiwu and @andrewsu labs at @scrippsresearch. biorxiv.org/content/10.1101/…
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You can install the #python package using "pip install biothings" pypi.org/project/biothings/

biothings

a toolkit for building high-performance data & knowledge APIs in biology

pypi.org
MyVariant.info@myvariantinfo20 Oct 2021
APIs like ours play a big role in #FAIRdata and #OpenData. The BioThings SDK makes building such APIs easier. More about it in the new #preprint from the @biothingsapi team: biorxiv.org/content/10.1101/…
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The BioThings SDK has been used to build APIs like the ones used by @DiseaseOutbreak. Learn more about it from the new #preprint biorxiv.org/content/10.1101/…
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Want to build your own biomedical data API like @mygeneinfo? Read about the BioThings SDK in our new #preprint on #biorxiv_bioinfo. #FAIRdata biorxiv.org/content/10.1101/…

BioThings SDK: a toolkit for building high-performance data APIs in biomedical research

Summary To meet the increased need of making biomedical resources more accessible and reusable, Web APIs or web services have become a common way to disseminate knowledge sources. The BioThings APIs...

biorxiv.org
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The Data Discovery Engine and Schema Playground are natural extensions of the BioThings #bioinformatics tools ecosystem. Learn more about them from our new #preprint doi.org/10.1101/2021.09.02.4…
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Hi @chunleiwu! I used MyGene.info API today. It's a super helpful tool, thanks for making it and for writing good instructions. I used it to grab Entrez # for a few hundred gene symbols. Went from "what's this tool?" to results in about 10 minutes. #Bioinformatics

MyGene.info | Gene Annotation as a Service.

Gene Annotation as a Service.

mygene.info
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BioThings API retweeted
Chunlei Wu@chunleiwu8 Sep 2021
Replying to @stromulus
🚀@stromulus that's awesome to hear! In case it's useful, our @biothings team made available other APIs like @myvariantinfo @mycheminfo @mydiseaseinfo too, in addition to @mygeneinfo :-)
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NEW #variant surveillance tool from @cvisb @scrippsresearch: Search by location to find #SARSCoV2 lineage & mutation prevalence in any country, state, or region at outbreak.info/location-repor… #COVID19 #opendata
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A new #SARS_CoV_2 mutation situation report feature is now available on outbreak.info. The tool is a collaborative effort by members of the labs of @K_G_Andersen @andrewsu & @chunleiwu at @scrippsresearch scripps.edu/news-and-events/…
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All #COVID19 and #SARSCoV2 data is available via #opensource API, built using @biothingsapi Try it: api.outbreak.info/
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OncoPDSS: an evidence-based clinical decision support system for #oncology pharmacotherapy at the individual level pubmed.ncbi.nlm.nih.gov/3277…

OncoPDSS: an evidence-based clinical decision support system for oncology pharmacotherapy at the...

OncoPDSS can serve as both an integrative knowledge base on cancer precision medicine, as well as a clinical decision support system for cancer researchers and clinical oncologists. It receives...

pubmed.ncbi.nlm.nih.gov
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BioThings API retweeted
MyGene.info@mygeneinfo3 Feb 2021
iGMDR: Integrated #Pharmacogenetic Resource Guide to Cancer Therapy and Research pubmed.ncbi.nlm.nih.gov/3291…

iGMDR: Integrated Pharmacogenetic Resource Guide to Cancer Therapy and Research - PubMed

Current pharmacogenetic studies have obtained many genetic models that can predict the therapeutic efficacy of anticancer drugs. Although some of these models are of crucial importance and have been...

pubmed.ncbi.nlm.nih.gov
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See @mygeneinfo Overview: elastic.co/blog/uncoiling-da… Slides: slideshare.net/mobile/anewge…
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The API was built using our #BioThings #SDK
DiseaseOutbreak@DiseaseOutbreak20 Oct 2020
Looking for #Clinicaltrials , research papers, #datasets, and more on #COVID19? Try our new tool (we also have APIs). #opendata #metadata outbreak.info/blog/outbreak-…
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