@BindingDb

Enabling research by making a growing collection of high-quality, quantitative, binding data findable and usable. Funded by @NIGMS. @bindingdb@mstdn.science

 San Diego, CA
bindingdb.org
Joined December 2020
  • Tweets136
  • Following373
  • Followers734
19Media
It took us a bit longer, but P&D version 01.2026 is live! Updated core data sources (@ChEMBL 37, @GuidetoPHARM 2026.02, @BindingDb, @Chemical_probes, @Boehringer opnMe set, @reactome and many others), refined probe classification, and legacy set cleanups.
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We've been working on making BindingDB faster and more robust (sorry for all the outages!), and I think we've really made progress now. Pages are loading more briskly and servers are less stressed. Let us know if this is working for you!
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We are pleased to announce our third BindingDB free webinar! Building Machine Learning Models Using Data from BindingDB -- Dr. Pat Walters, Chief Scientist OpenADMET 8:00 am California time, February 24, 2026. Register here: uchealth.zoom.us/webinar/reg…
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Looks like we are back to normal operation again. Apologies for the prolonged glitch. Please contact us if you notice any new issues. Happy 2026!
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We apologize for the persistent BindingDB downtime. If you need data in a hurry, check out our quarterly archives at UCSD Digital Library: library.ucsd.edu/dc/search?f…
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BindingDB is having technical issues- apologies. We are working on this.
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We are thrilled that ChEMBL 36 includes a LOT more of our open-access US Patent data! It's all about data-sharing :-) ebi.ac.uk/chembl/
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A recording of the latest BindingDB webinar, Synergies between BindingDB and PubChem, Dr. Christopher Southan, is now available here: bindingdb.org
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Please join our second BindingDB webinar "Synergies between BindingDB and PubChem”, Dr. Chris Southan, Honorary Professor, University of Edinburgh, 8am California time, Wednesday, September 17!  About 30 minutes, followed by open Q&A Register here: tinyurl.com/BDBWebinar2
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To help with training and testing AI and other models, BindingDB downloads and search results now provide the publication date and BindingDB curation date of each measurement. #CADD
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😢
Sergey Ovchinnikov@sokrypton3 Jul 2025
CASP is getting cut by NIH... 😢 (Anyone with extra funds wanna help support perhaps the most important competition of the century?) science.org/content/article/…

Exclusive: Famed protein structure competition nears end as NIH grant money runs out

Agency silent on funding renewal for contest that inspired creation of AIs that predicted how proteins would fold

science.org
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Happy to see Sandbox AQ making good use of BindingDB! sandboxaq.com/post/sair-the-…

SAIR: the Structurally Augmented IC50 Repository | SandboxAQ

sandboxaq.com
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Thanks to all who joined our first webinar this week! The recording, which includes some of the Q&A, is now posted on our website: bindingdb.org
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Please follow us on BlueSky! @bindingdb.bsky.social
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BindingDB is starting a series of free 1-hour webinars designed to be of interest to our users. We aim to host talks by members of the BindingDB team, BindingDB users, and other experts. We are excited to open this forum and look forward to meeting you! Details below 👇
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Webinar 1: BindingDB: A Massive, Publicly Accessible, Knowledgebase of Protein-Ligand Binding Data -Mike Gilson -8:00 am Pacific Time, Feb 27, 2025 -Register here: uchealth.zoom.us/meeting/reg…
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BindingDB is starting a series of free 1-hour webinars designed to be of interest to our users. We aim to host talks by members of the BindingDB team, BindingDB users, and other experts. We are excited to open this forum and look forward to meeting you! Details below 😀
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Webinar 1: BindingDB: A Massive, Publicly Accessible, Knowledgebase of Protein-Ligand Binding Data. -- Mike Gilson -- 8 am Pacific Time, Feb 27, 2025 -- Register here: uchealth.zoom.us/meeting/reg…
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I'm getting started on BlueSky as @bmix.bsky.social (Display name Michael K Gilson). See you there!
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We are excited to announce publication of our latest BindingDB update paper! academic.oup.com/nar/advance…

BindingDB in 2024: a FAIR knowledgebase of protein-small molecule binding data

Abstract. BindingDB (bindingdb.org) is a public, web-accessible database of experimentally measured binding affinities between small molecules and proteins

academic.oup.com
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