@aphillippy
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Finished a human genome, working on a few more 👨💻 Posts are my own
Maryland, USA
Joined June 2009
- Tweets6.3K
- Following904
- Followers16.2K
- Likes4.3K
Adam Phillippy retweeted
Extra-long tandem repeats (ETRs) such as centromeres and immunoglobulin loci are difficult to align. UniAligner is a computational method for efficiently and accurately aligning ETRs, facilitating analysis of their variation and evolution. @AndreyBzikadze
nature.com/articles/s41592-0…
Adam Phillippy retweeted
Thrilled to share my first paper on GWAS! 📚🧬We utilized imputed genotypes through a new Asian population panel we established, and integrated GWAS with snATAC data to uncover causal cell types! 🧬🧪 Published in Science Advances today! 🎉🥳🥳
doi.org/10.1126/sciadv.adg63…
Adam Phillippy retweeted
New video from Front Street shows virtually all of downtown Lahaina has been burned down.
Adam Phillippy retweeted
We’re looking for a new Head of Research.
Join us to lead, inspire, and shape the future of bioinformatics
Closing: 2 Oct 2023
Head of Research
We are excited to launch this opportunity to join us as Head of Research @emblebi.
You'll play a key role setting vision, strategy and scientific direction for the Institute, leading the team into the next decade of life science.
embl.org/jobs/position/EBI02…
Adam Phillippy retweeted
I'm so proud of the @IndigiData initiative. Since starting two summers ago, this workshop has skyrocketed to create timely and much-needed informatics and Indigenous data science workshops on topic areas of direct impact to Tribal Nations. Ahéhée' to everyone who make it happen!
Thank you all so much for your help in TWO @IndigiData #Indigenous #data #science workshops this summer!
We focused on the topics of gene editing, metabarcoding, Indigenous data sovereignty, IP law, and data ethics on Shakopee Mdewakanton Sioux and Lummi lands. Until next year!
ALT Side by side images of IndigiData workshop participants
Adam Phillippy retweeted
🚀 Unleash the need for speed with the sizzling hot Mashtree v1.4 update! ⚡️ Experience the thrill of faster performance as we bid adieu to the sqlite dependency and usher in a sleeker codebase. 📦Share your thoughts on GitHub issues. ✨💻 Update now: github.com/lskatz/mashtree 🌐
Adam Phillippy retweeted
Distinguished @UofMaryland Professor Rita Colwell made @Forbes' "50 over 50" list of women changing the world through innovation. A renowned microbiologist for her work to eradicate diseases, Colwell also founded a tech company that analyzes microbiomes.
forbes.com/50over50/innovati…
Adam Phillippy retweeted
NCBI Comparative Genome Viewer, NCBI Datasets, Nextflow, Smudgeplots, Treeval, VGP Galaxy Pipeline!
27 sessions already scheduled across time zones
FREE and OPEN-TO-ALL
Over 310 spaces already booked, so sign up ASAP at BGA23.org/sessions
Adam Phillippy retweeted
This year BG23 has an Academy! Come learn how to use that software you tried alone but had many questions! Led by experts and developers on BlobToolKit, BUSCO, EarlGrey, EASEL, EBI Data Portals, ENA Submissions, Ensembl Annotation, Gfastar, GoaT, hifiasm, Merqury, MitoHiFi, +
Adam Phillippy retweeted
Major, fatal errors found in the data and methods of a 2020 paper in @Nature, including millions of reads mis-identified as bacteria. The "cancer microbiome" in this study was simply not there. @abrahamgihawi @elapertea @YuchenGe1 @JenniferLu717 biorxiv.org/content/10.1101/…
Adam Phillippy retweeted
I would like to welcome Jen Troyer, Ph.D., in her new role as incoming Director of NHGRI’s Division of Extramural Operations. For years, Bettie Graham, Ph.D. – a legend @NIH and beyond! – has served in this position; she will be outgoing Director until she retires in late 2023.
ALT Scientist standing with her arms crossed in front of her.
My username is not available on Instagram/Threads :( that might be the highest switching cost I've encountered so far
Promising new metagenome assembler for HiFi data by @gaetan_benoit
Efficient High-Quality Metagenome Assembly from Long Accurate Reads using Minimizer-space de Bruijn Graphs biorxiv.org/cgi/content/shor… #biorxiv_bioinfo
Adam Phillippy retweeted
Our new minimizer-space HiFi-read mapper, mapquik, is now published online (as an advance article) in Genome Research!
genome.cshlp.org/cgi/content…
The recording for the RECOMB 2023 talk is also now up: youtu.be/ZXZSCDzVp3A
Adam Phillippy retweeted
Amazingly, we offer this capability completely for free in Galaxy so that all labs, big and small, can take advantage of it. Within VGP, we look forward to working together to assemble all 70k vertebrate species! Tutorials and workflows are available here: galaxyproject.org/projects/v…
Adam Phillippy retweeted
Super excited to announce our new VGP-ERGA-Galaxy pipeline for scalable, accessible, and reproducible reference genome assembly. In just a few clicks anyone anywhere can assemble their genome to VGP quality! @genomeark @galaxy @erga_biodiv biorxiv.org/content/10.1101/…
Adam Phillippy retweeted
I'm absolutely thrilled to share that I will be joining @PennGenetics and @PennEpiInst as an Assistant Professor in January 2024! My lab will investigate centromere variation/evolution and its impact on health & disease using long-read sequencing! Reach out if you'd like to join!
Adam Phillippy retweeted
Many thanks to those who made this work possible!
@mrvollger @naechyun_chen Dylan Taylor, William Harvey @glennis_logsdon @rajivmccoy @mike_schatz
@EichlerEE @EichlerLab @GenomeBiology Special thanks to my team (Xiangyu & Xuankai & others)! genomebiology.biomedcentral.…
