@abcBioinfo

Computational and analytical support for biomedical research

 New york
abc.med.cornell.edu
Joined September 2013
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Check out our new website! abc.med.cornell.edu
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"1 million reads provide good accuracy for the abundance of highly-expressed genes" sciencedirect.com/science/ar…
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A comparison of extraction kits for the isolation of total RNA from small tissue samples ncbi.nlm.nih.gov/pmc/article…

A comparison of commercially-available automated and manual extraction kits for the isolation of...

This study compared the performance of five commercially available kits in extracting total RNA from small eukaryotic tissue samples (<15 mg). Total RNA was isolated from fathead minnow (Pimephales...

pmc.ncbi.nlm.nih.gov
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Assessing the effects of low-input RNA-seq youtu.be/bB7Xw_S4nqk

Assessing the effects of low-input RNA-seq

Phil Ewels from NGI presents a summary of a low-input and low RIN-v...

youtube.com
Effect of RNA integrity on uniquely mapped reads in RNA-Seq biomedcentral.com/1756-0500/… #bmcresearchnotes
subSeq: Determining appropriate sequencing depth through efficient read subsampling bioinformatics.oxfordjournal…
RNA-seq Analysis Reveals Contamination of Multiple Nasopharyngeal Carcinoma Cell Lines with HeLa Cell Genomes jvi.asm.org/content/88/18/10…
An RNA-seq Transcriptome and Splicing Database of Glia, Neurons, and Vascular Cells of the Cerebral Cortex jneurosci.org/content/34/36/…

An RNA-Sequencing Transcriptome and Splicing Database of Glia, Neurons, and Vascular Cells of the...

The major cell classes of the brain differ in their developmental processes, metabolism, signaling, and function. To better understand the functions and interactions of the cell types that comprise...

jneurosci.org
Applied Bioinf Core retweeted
Olivier Elemento@ElementoLab30 Aug 2014
Best Paper award at Usenix Security'14 conf: framework for privacy in pharmacogenomic analyses usenix.org/system/files/conf… via @jgiannopoulou
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The final #GDS policy sets expectations for investigators to broadly & sensibly share research data. 1.usa.gov/1q5iH3h #datasharing
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Omics Pipe: A Computational Framework for Reproducible Multi-Omics Data Analysis biorxiv.org/content/early/20…
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Correlation coefficient is insufficient at assessing equality in replicates jbiolres.com/content/21/1/3 #journalofbiologicalresearch-thessaloniki
Correction of gene expression data: performance-dependency on inter-replicate and inter-treatment biases sciencedirect.com/science/ar…
Detecting and correcting systematic variation in large-scale RNA sequencing data go.nature.com/5vYYFa
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Multi-platform assessment of transcriptome profiling using RNA-seq in the ABRF next-gen. sequencing study go.nature.com/vwEy8m
A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the SEQC go.nature.com/gJjAlY
Reagent contamination can critically impact sequence-based microbiome analyses biorxiv.org/content/early/20…
Influence of RNA extraction methods and library selection schemes on RNA-seq data biomedcentral.com/1471-2164/… #bmcgenomics
#PLOSONE: A Comparative Study of Techniques for Differential Expression Analysis on RNA-Seq Data dx.plos.org/10.1371/journal.…
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show your support for research funding @WeillCornell @genomeresearch youtube.com/watch?v=k60Zaoaf…
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