@__ThomasRoder__

Co-founder and CEO of Abrinca Genomics Bioinformatician at Interfaculty Bioinformatics Unit, University of Bern

Joined November 2021
  • Tweets26
  • Following50
  • Followers45
1Media
Thomas Roder retweeted
SIB@ISBSIB4 Nov 2024
Bioinformaticians of the world, it’s your time to shine! The SIB Bioinformatics Awards are now open to entries. They promote excellence, diversity & innovation in the field. Submit your best work & share with colleagues. sib.swiss/bioinformatics-awa… #SIBawards #ComputationalBiology
3
26
1
25
5,107
🔬 Do you want to link bacterial phenotypes to genes? 🧬 We just published #Scoary2, an ultra-fast microbial genome-wide association studies (#mGWAS) software with a data exploration app! #Bacteria #Genomics #Bioinformatics #OpenGenomeBrowser
BMC
@BioMedCentral18 Apr 2024
An article published in @GenomeBiology presents Scoary2: an ultra-fast microbial genome-wide association studies software. genomebiology.biomedcentral.…

Scoary2: rapid association of phenotypic multi-omics data with microbial pan-genomes

Genome Biology - Unraveling bacterial gene function drives progress in various areas, such as food production, pharmacology, and ecology. While omics technologies capture high-dimensional...

link.springer.com
1
2
3
224
#Scoary2 is the first tool to enable the study of large phenotypic datasets (e.g., mass spectrometry) using mGWAS. This is made possible by its data exploration app which can be linked to e.g. #OpenGenomeBrowser, enabling fast, holistic and user-friendly data analysis!
26
🚀 Looking forward to where our journey with @venturekick will lead! #startup #venturekick #innovation #bioinformatics #opengenomebrowser
Venture Kick
@venturekick8 Dec 2023
Accelerating innovation in genomics, energy transmission, batteries, carbon storage, solar, and cardiology: Abrinca Genomics, COSKIN, Evolium, InSituStreTech, Sun-Ways, ValTech Lifesciences enter #VentureKick, winning CHF 10,000 each! Congrats! venturekick.ch/CHF-10000-for…
1
2
82
Thomas Roder retweeted
SIB@ISBSIB12 Sep 2023
Congratulations to our laureates and many thanks to our award committee and international juries. You could be next! Find out more about the awards and sign up to be notified when the next call for entries opens in 2024 here: sib.swiss/bioinformatics-awa… #bc2basel #bioinformatics
4
10
598
I'm thrilled to announce that I've been honored with the Innovative Resource Award by SIB! 🏆🌟 Thanks to everyone who supported my journey.
Elisabeth Bik@MicrobiomDigest12 Sep 2023
Replying to @MicrobiomDigest @PetukhovViktor @NatureBiotech @KharchenkoLab @ISBSIB @mariabrbic
Thirdly, the @ISBSIB Innovative Resource Award is handed out by Laurent Falquet. It goes to Thomas Roder @__ThomasRoder__ for the development of the OpenGenomeBrowser. #BC2Basel
2
4
1,007
There are still some places left for our #reproducible #research course with #snakemake 🐍, #docker 🐋 and #singularity in beautiful #Davos 🏔️🇨🇭 in October!
SIBTraining@SIBTraining28 Aug 2023
🚨 REMINDER 📢 Introduction to Containers and Snakemake for Reproducible Research 👉 12-13 October 2023 with @geertvangeest @aathbt @isbsib 📍 Davos @SIAF_UZH #bioinformatics #training #software #workflows #ReproducibleScience sib.swiss/training/course/20…

Introduction to Containers and Snakemake for Reproducible Research

Overview Reproducible data analysis in bioinformatics goes beyond good documentation and sharing code. Often, analyses depend on different compute env

sib.swiss
5
7
1,350
On Monday, I finally defended my PhD thesis 👨‍🎓 with the title "Decoding Microbial Genomes: Novel User-Friendly Tools Applied to Fermented Foods"! I am beyond grateful for all the great people who supported me! 🙏 🧬🧫🦠 #PhD #grateful #OpenGenomeBrowser
2
66
Tools like #quarto #GitHub and #zenodo don't only make your work #FAIR, they also increase your productivity + make your reports/websites look awesome 😎! Check out our tutorial @BC2Conference: bc2.ch/tutorials-workshops#t…. BTW: early bird registration ends next week!
10
18
1,742
Thomas Roder retweeted
[BC]2@BC2Conference10 May 2023
Replying to @BC2Conference @zkutalik @GfellerD @P_Palagi @gardeux_vincent @AiswwaryaPrasad @EPFL_en @CHUVLausanne @unil @UZH_en @IzaskunMallona @UZH_Science @AnthonySonrel @markrobinsonca @ensembl @mirloupa @emblebi @ISBSIB
Learn to assemble and annotate genomes, and load them into #OpenGenomeBrowser in this #tutorial, for user-friendly comparative genomics! Discover OpenGenomeBrowser, a self-hostable & open-source software. #genomeassembly #openscience 👉Register: tinyurl.com/bdhbr4dp
7
6
705
Thomas Roder retweeted
Charlie Johnson@BioMath20 Apr 2023
For best results, always start with high quality clean DNA 🧬
12
22
4
203
28,460
Our group @unibern 🇨🇭🏔 ⛷ is expanding and we're looking for a #bioinformatician 🧬 and #sysadmin 🖥️ If you want to work in a great team on a wide range of scientific projects 🤓, check out these positions: tinyurl.com/e2bp4ua4 tinyurl.com/ba47m63v #jobsearch
10
1
6
1,753
I plan to have a weekly highlight of a course on #Glittr. This week: 'Computational Genomics with R' from @AltunaAkalin. An insanely comprehensive book with everything you need if you're doing #genomics and #bioinformatics analysis with #rstats. Link: tinyurl.com/4jrmwz53
2
44
135
13,072
Just updated our Events page with some pictures/tweets from brickopore users around the world. Great to see all this passion for science communication using Lego Mindstorms. @LEGO_Group See brickopore.co.uk/events/
3
4
391
I'm very happy to share what I've been working on over the last 3 years: OpenGenomeBrowser - The solution for organizing and analysing your microbes. #bioinformatics #comparativegenomics #genomics #opensource #genomebrowser #opengenomebrowser bmcgenomics.biomedcentral.co…

OpenGenomeBrowser: a versatile, dataset-independent and scalable web platform for genome data...

BMC Genomics - As the amount of genomic data continues to grow, there is an increasing need for systematic ways to organize, explore, compare, analyze and share this data. Despite this, there is a...

link.springer.com
1
21
98
8,840
@RBruggmann @ISBSIB @grstiftung_ch
154
For the record, the blueprint of our Blocksford @Brickopore sequencer can be found at brickopore.co.uk and our improved code is hosted at github.com/MrTomRod/brickopo…. Many thanks to Zac and Lea Taylor as well as Heidi Tschanz-Lischer for their input!
SeqComplete@SeqComplete11 Sep 2022
#nanopores @SwissIonChannel: 'This is the coolest #DNA sequencing machine, not @nanopore, but #Legopore @unibern. Night of research #NdFunibern. ' xitter.cf/SwissIonChannel/status…, see more tweetedtimes.com/v/176?s=tnp
1
1
3
Congratulations to all presenters, it was a great display of posters with so many projects and tools and collaborations across @ISBSIB groups, very hard to choose the top 3!
SIB@ISBSIB15 Jun 2022
Replying to @ISBSIB @rmwaterhouse @carmonation @P_Palagi @ELIXIREurope @RonD_Appel @cdessimoz
And the #SIBdays22 poster prizes go to: @gabriel_aurelie, Jana Koch & Thomas Roder. Congratulations!
3
6
Load more