Our long-term research goal is to understand and predict gene regulation based on DNA sequence information and genome-wide experimental data.

Kansas City, MO
Joined December 2018
NEW #Research published @NatureComms: Scientists in the @ZeitlingerLab developed PISA, a new #AI interpretation method that lets researchers see, at high resolution, what AI models learn from DNA sequences. Using that insight, the team discovered they could better control what the models learn next. By separating the biology they wanted to study from bias introduced by the experiment, the researchers were able to train a more focused model and uncover patterns in DNA they didn’t see before. That clearer view led to a surprising biological insight with implications for understanding gene regulation and, potentially, genetic disease: the way #DNA is wrapped around nucleosomes may help predict how it is organized in 3D inside the nucleus. Hear Investigator @JuliaZeitlinger, Ph.D., explain how PISA could become a broadly useful tool for scientists to help bridge the gap between powerful AI models and the biological mechanisms researchers want to understand. 🔗bit.ly/4gwN0Oy
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Happy to have contributed to this work! Amazing to see cis-regulatory motif maps across so many cell types readily available. Get a bird’s eye view of the cis-regulatory code or dive in deep into specific details, I highly recommend it!
Excited to release AlphaGenome Atlas 🧬 We used AlphaGenome to predict the regulatory impact of all 9B possible SNVs in the human genome. We collaborated with amazing scientists to analyze and apply it, and developed a portal to browse the genome using this new lens 🔬 🌐 Portal: alphagenome.google/atlas 📖 Blog: goo.gle/4heuCvn 📄 Preprint: deepmind.google/blog/alphage… 🧵 1/6
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ZeitlingerLab retweeted
Excited to release AlphaGenome Atlas 🧬 We used AlphaGenome to predict the regulatory impact of all 9B possible SNVs in the human genome. We collaborated with amazing scientists to analyze and apply it, and developed a portal to browse the genome using this new lens 🔬 🌐 Portal: alphagenome.google/atlas 📖 Blog: goo.gle/4heuCvn 📄 Preprint: deepmind.google/blog/alphage… 🧵 1/6
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I’m super excited to share our recent work on the establishment of chromatin accessibility during early development! This work is now available online at Developmental Cell. Check it out!
ZeitlingerLab@ZeitlingerLab8 Aug 2023
Do only pioneer TFs open chromatin? No! Does motif affinity affect how well pioneering TFs work? Yes! Learn more by checking out our manuscript, now out in Developmental Cell! sciencedirect.com/science/ar…
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Our study on the cis-regulatory code combining deep learning and mechanistic experiments in the early Drosophila embryo is out! Very proud and grateful for everyone’s contribution 😊
ZeitlingerLab@ZeitlingerLab8 Aug 2023
Do only pioneer TFs open chromatin? No! Does motif affinity affect how well pioneering TFs work? Yes! Learn more by checking out our manuscript, now out in Developmental Cell! sciencedirect.com/science/ar…
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Happy #NationalPostdocAppreciationWeek! Thank you, Sabrina, for mentoring the next generation of scientists at Stowers. #NPAW #NPAW2022 #postdoc #research
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[Check it out] Talk from @JuliaZeitlinger, @ZeitlingerLab at @ScienceStowers is now up for anyone who missed it: youtu.be/3pOE9Ku_3GY
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Mount Sinai x OBS Computational Omics Seminar @IcahnInstitute 📢 @craigsmail at @ChildrensMercy & @mjbonder at @emblebi @DKFZ 📢 @JuliaZeitlinger, @ZeitlingerLab at @ScienceStowers ⏲️Time: 3/23/2021 10am ET 👉Register: us02web.zoom.us/meeting/regi… @NatureGenet #openscience
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Nice summary of our BPNet paper. @JuliaZeitlinger @Avsecz @MelanieWeilert @ZeitlingerLab @avshrikumar @gagneurlab
#NatGenNV Deciphering cis-regulatory grammar with deep learning (Miraldi, Chen & Weirauch) go.nature.com/3vgF8sg on go.nature.com/3qyrVrL
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Base-resolution models of transcription-factor binding reveal soft motif syntax nature.com/articles/s41588-0… Its ALIVE!! 1/
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Congratulations to Assistant Investigator @NicolasRohner, PhD, who received an NIH Director's New Innovator Award from @NIH. This prestigious award supports unusually innovative, high-impact research from early career investigators. #NIHHighRisk bit.ly/2GlUYgH
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Out today in @ScienceMagazine: a new publication from the Sánchez Alvarado Lab. The research, done with killifish & zebrafish, explores genetic mechanisms underlying uneven distribution of regenerative capacities in vertebrates. @Planaria1 @weiwang0128 science.sciencemag.org/conte…
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YISR IS HERE! We look forward to all of today’s speakers and seeing everyone virtually. @lindymcbr @Sergiogma91 @ZeitlingerLab @LabPiotrowski @karlay123 @aussiebiologist @YuLab19 @ScienceStowers
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Beautiful enhancer dissection across Drosophila evolution reveals that enhancers can be overlapping and interwoven in their function!
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Great read on what biologists see ahead in genomics! What’s not discussed is the increasing power of machine learning in regulatory genomics. This makes me wonder - are there enough efforts to merge the experimental and computational approaches in genomics?
To celebrate our upcoming 20-year anniversary, we commissioned a #Viewpoint in which 12 leading researchers reflect on 'The road ahead in genetics and genomics' rdcu.be/b6qQ5 #SharedIt
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