ZeitlingerLab retweeted
NEW #Research published @NatureComms: Scientists in the @ZeitlingerLab developed PISA, a new #AI interpretation method that lets researchers see, at high resolution, what AI models learn from DNA sequences. Using that insight, the team discovered they could better control what the models learn next.
By separating the biology they wanted to study from bias introduced by the experiment, the researchers were able to train a more focused model and uncover patterns in DNA they didn’t see before.
That clearer view led to a surprising biological insight with implications for understanding gene regulation and, potentially, genetic disease: the way #DNA is wrapped around nucleosomes may help predict how it is organized in 3D inside the nucleus.
Hear Investigator @JuliaZeitlinger, Ph.D., explain how PISA could become a broadly useful tool for scientists to help bridge the gap between powerful AI models and the biological mechanisms researchers want to understand.
🔗bit.ly/4gwN0Oy
ZeitlingerLab retweeted
Happy to see our most recent paper out! Fantastic lead by @MelanieWeilert and a fun collaboration with @rmartinezcorral in Barcelona!
Cooperativity enables widespread role of low-affinity motifs in chromatin accessibility and increases regulatory potential dlvr.it/TV9LR8
ZeitlingerLab retweeted
Happy to have contributed to this work! Amazing to see cis-regulatory motif maps across so many cell types readily available. Get a bird’s eye view of the cis-regulatory code or dive in deep into specific details, I highly recommend it!
Excited to release AlphaGenome Atlas 🧬 We used AlphaGenome to predict the regulatory impact of all 9B possible SNVs in the human genome. We collaborated with amazing scientists to analyze and apply it, and developed a portal to browse the genome using this new lens 🔬
🌐 Portal: alphagenome.google/atlas
📖 Blog: goo.gle/4heuCvn
📄 Preprint: deepmind.google/blog/alphage…
🧵 1/6
ZeitlingerLab retweeted
Excited to release AlphaGenome Atlas 🧬 We used AlphaGenome to predict the regulatory impact of all 9B possible SNVs in the human genome. We collaborated with amazing scientists to analyze and apply it, and developed a portal to browse the genome using this new lens 🔬
🌐 Portal: alphagenome.google/atlas
📖 Blog: goo.gle/4heuCvn
📄 Preprint: deepmind.google/blog/alphage…
🧵 1/6
ZeitlingerLab retweeted
Exciting news! Our work on Hippo pathway TF cis-regulation is now published in Cell Genomics!
Check it out here: cell.com/cell-genomics/fullt…
Grateful to all co-authors who made this possible! @ZeitlingerLab
#HippoPathway #cisregulation #TFcooperativity #Deeplearning
ZeitlingerLab retweeted
I’m super excited to share our recent work on the establishment of chromatin accessibility during early development! This work is now available online at Developmental Cell. Check it out!
ZeitlingerLab@ZeitlingerLab8 Aug 2023United States
United StatesConnected via WebAccount-level information, not a live location or per-post device.
Do only pioneer TFs open chromatin? No!
Does motif affinity affect how well pioneering TFs work? Yes!
Learn more by checking out our manuscript, now out in Developmental Cell!
sciencedirect.com/science/ar…
ZeitlingerLab retweeted
Our study on the cis-regulatory code combining deep learning and mechanistic experiments in the early Drosophila embryo is out! Very proud and grateful for everyone’s contribution 😊
ZeitlingerLab@ZeitlingerLab8 Aug 2023United States
United StatesConnected via WebAccount-level information, not a live location or per-post device.
Do only pioneer TFs open chromatin? No!
Does motif affinity affect how well pioneering TFs work? Yes!
Learn more by checking out our manuscript, now out in Developmental Cell!
sciencedirect.com/science/ar…
ZeitlingerLab retweeted
Happy #NationalPostdocAppreciationWeek! Thank you, Sabrina, for mentoring the next generation of scientists at Stowers.
#NPAW #NPAW2022 #postdoc #research
ZeitlingerLab retweeted
[Check it out] Talk from @JuliaZeitlinger, @ZeitlingerLab
at @ScienceStowers is now up for anyone who missed it: youtu.be/3pOE9Ku_3GY
ZeitlingerLab retweeted
Mount Sinai x OBS Computational Omics Seminar @IcahnInstitute
📢 @craigsmail at @ChildrensMercy & @mjbonder at @emblebi @DKFZ
📢 @JuliaZeitlinger, @ZeitlingerLab at @ScienceStowers
⏲️Time: 3/23/2021 10am ET
👉Register: us02web.zoom.us/meeting/regi…
@NatureGenet #openscience
ZeitlingerLab retweeted
Nice summary of our BPNet paper. @JuliaZeitlinger @Avsecz @MelanieWeilert @ZeitlingerLab @avshrikumar @gagneurlab
#NatGenNV Deciphering cis-regulatory grammar with deep learning (Miraldi, Chen & Weirauch) go.nature.com/3vgF8sg on go.nature.com/3qyrVrL
ZeitlingerLab retweeted
Base-resolution models of transcription-factor binding reveal soft motif syntax
nature.com/articles/s41588-0…
Its ALIVE!! 1/
ZeitlingerLab retweeted
Congratulations to Assistant Investigator @NicolasRohner, PhD, who received an NIH Director's New Innovator Award from @NIH. This prestigious award supports unusually innovative, high-impact research from early career investigators. #NIHHighRisk bit.ly/2GlUYgH
ZeitlingerLab retweeted
Out today in @ScienceMagazine: a new publication from the Sánchez Alvarado Lab. The research, done with killifish & zebrafish, explores genetic mechanisms underlying uneven distribution of regenerative capacities in vertebrates. @Planaria1 @weiwang0128
science.sciencemag.org/conte…
ZeitlingerLab retweeted
YISR IS HERE! We look forward to all of today’s speakers and seeing everyone virtually.
@lindymcbr
@Sergiogma91 @ZeitlingerLab
@LabPiotrowski
@karlay123 @aussiebiologist
@YuLab19
@ScienceStowers
ZeitlingerLab retweeted
Beautiful enhancer dissection across Drosophila evolution reveals that enhancers can be overlapping and interwoven in their function!
This Post is from an account that no longer exists. Learn more
ZeitlingerLab retweeted
Great read on what biologists see ahead in genomics! What’s not discussed is the increasing power of machine learning in regulatory genomics. This makes me wonder - are there enough efforts to merge the experimental and computational approaches in genomics?
To celebrate our upcoming 20-year anniversary, we commissioned a #Viewpoint in which 12 leading researchers reflect on 'The road ahead in genetics and genomics' rdcu.be/b6qQ5 #SharedIt
ZeitlingerLab retweeted
Interested in using deep learning to discover cis-regulatory code? In our updated preprint biorxiv.org/content/10.1101/… (collab. between @anshulkundaje, @Avsecz, @ZeitlingerLab), we discuss why this works so well. Here's a quick summary 1/8
ZeitlingerLab retweeted
We're excited to present our latest work on #chromatin conformation during #Drosophila development! Now available on @biorxivpreprint biorxiv.org/content/10.1101/…
Read on for an overview! 1/9 @vaquerizasjm @liz__is
ZeitlingerLab retweeted
Our BPNet paper been thru 2 review rounds (10 months) now rejected cuz two reviewers appear to be in eternal love with PWMs😂. But wait. U can still read/use/cite it biorxiv.org/content/10.1101/…! Thank u @biorxivpreprint for existing!



















