ALT "Identifying therapeutic candidates for endometriosis through a transcriptomics-based drug repositioning approach", Tomiko T. Oskotsky, Arohee Bhoja, Daniel Bunis, Brian L. Le, Alice S. Tang, Idit Kosti, Christine Li, Sahar Houshdaran, Sushmita Sen, Julia Vallve´-Juanico, Wanxin Wang, Erin Arthurs, Arpita Govil, Lauren Mahoney, Lindsey Lang, Brice Gaudilliere, David K. Stevenson, Juan C. Irwin, Linda C. Giudice, Stacy L. McAllister, and Marina Sirota. iScience 2024

ALT Figure from "Antidepressant use during pregnancy and the risk of preterm birth – a cohort study" by Guy Amit, Chen Yanover, Maytal Bivas-Benita, Irena Girshovitz, Tal Helbitz, Tamar Sudry, Vered Bar, Alice S. Tang, Brian L. Le, Jacquelyn Roger, Sarah Woldemariam, Idit Kosti, Tomiko T. Oskotsky, Pinchas Akiva & Marina Sirota. npj Women's Health volume 2, Article number: 5 (2024)

ALT Monica Yang, Edna Rodas, Claire Dubin, Umair Khan, Jessica Neely (and Arlo), Yaqiao Li, Leen Arnaout, Alice Tang, Carlota Pereda Serras, Tomiko Oskotsky, Marina Sirota, and Silvia Miramontes at Mission Rock Resort, SF

ALT AMIA conference attendees speaking with Alice Tang about her work

ALT This figure provides an overview of patient selection for UCSF and the UC-wide validation cohort, as well as the analyses performed, which include low-dimensional embedding, differential analysis, and network analysis. EMR Electronic medical records, OMOP Observational Medical Outcomes Partnership, PS Propensity score, R&E Race and ethnicity, UCD University of California Davis, UCI University of California Irvine, UCLA University of California Los Angeles, UCSD University of California San Diego, UCSF University of California San Francisco, UMAP Uniform Manifold Approximation and Projection. Green represents Asian-identified patients; orange represents Black-identified patients; purple represents Latine-identified patients, and pink represents White-identified patients. https://www.nature.com/articles/s43856-023-00280-2

ALT Dr. Marina Sirota discusses her lab's work of "Leveraging Molecular and Clinical Data to Better Understand Alzheimers Disease", covering the work of Alice Tang, Sarah Woldemariam, Yaqiao Li, Silvia Miramontes, Idit Kosti, Ali Taubes, Manish Paranjpe, Tomiko Oskotsky, and collaborators Yadong Huang, Ben Glicksburg, Mesude Bicak, and many others

ALT Dr. Marina Sirota discussing the work of clinical phenotyping of AD leveraging EMR work led by MD/PhD student Alice Tang

ALT Dr. Marina Sirota talking about the AD single cell analysis work led by former and current grad students, Stella Belonwu and Yaqiao Li, respectively

ALT Dr. Sirota discussing the EMR validation of Bumetanide, done by Idit Kosti and Tomiko Oskotsky in collaboration with Mt Sinai colleagues Mesude Bicak and Ben Glicksburg, identified by the drug repurposing work led by Ali Taubes

ALT Zhoujingpeng (Wallance) Wei of Team UWiscMadison (University of Wisconsin-Madison, USA) Presentation: "An Ensemble Model to Predict Preterm Birth Using Vaginal Microbiome Data"

ALT Pierfrancesco Novielli of Team AI4knowledge (Università degli Studi di Bari Aldo Moro, Italy) Presentation: "Ensemble machine learning to predict preterm birth from vaginal microbiome"

ALT Abigail Kuntzleman of Team TechtmannLab (Michigan Technological University, USA) Presentation: "Random forest model accurately predicts early preterm labor"

ALT Eunyong Kim of Team KBJ (Gwangju Institute of Science & Technology and the Korean Bioinformation Center, Korea) Presentation: "Prediction model construction of early-preterm birth via vaginal microbiomes based on ensemble learning approach"

ALT Tomiko and Alennie speaking with conference attendants

ALT Alennie talking about MaLiAmPi, the tool that allowed us to harmonize the microbiome datasets used in our challenge

ALT Tomiko talking about the validation work led by Alice Tang, Jonathan Golob, Verena Chung, and Jake Albrecht

ALT Sharing insights into the "challenges of the challenge"

ALT Dream Challenge 2022 webpage, https://www.synapse.org/preterm_birth_microbiome

ALT Celebrating our summer interns and Adi at Stem Kitchen