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Our first paper is now online, cheers for @AskaryLab for the hard work and tremendous support during this project.
Have you used spatial genomics to map cell types in your favorite tissue? Are you interested in finding patterns in your results? We’ve developed a method just for you. The first paper from our lab is now on bioRxiv!
biorxiv.org/content/10.1101/…
Zain Samadi retweeted
Spatial MOtif REcognition (SMORE) is now peer-reviewed and out at @GenomeBiology Updates include analysis of sequencing-based spatial transcriptomics (Slide-Seq) and a whole brain
dataset with ~4 million cells, showing versatility and scalability of SMORE. genomebiology.biomedcentral.…
Have you used spatial genomics to map cell types in your favorite tissue? Are you interested in finding patterns in your results? We’ve developed a method just for you. The first paper from our lab is now on bioRxiv!
biorxiv.org/content/10.1101/…
This MATLAB implementation is matched with STREME's original implementation and is especially useful in understanding details of motif finding algorithms.
As a side product, while developing SMORE, @SamadiZain also reimplemented the original STREME algorithm in MATLAB. This is especially convenient for Windows users: github.com/zsamadi/MATLAB-ST…
Zain Samadi retweeted
Have you used spatial genomics to map cell types in your favorite tissue? Are you interested in finding patterns in your results? We’ve developed a method just for you. The first paper from our lab is now on bioRxiv!
biorxiv.org/content/10.1101/…