@ResearchGenome

Interested in #plants #science #bioinformatics #genomics, #evolution, #TEs, #transcriptomics, #RNAseq, #synbio #sequencing: #nanopore #PacBio #Illumina

 Austral
Joined February 2019
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From CRISPR breakthroughs to genomic insights, scientists are unlocking traits like drought resistance, nutrition, and yield in neglected crops. Genome editing could transform agriculture - boosting small-scale farming! 🌍 doi.org/10.3389/fpls.2023.12… #FoodSecurity #OrphanCrops 17/🧵

Frontiers | Editorial: Genomics and gene editing of orphan plants

Orphan crops are of vital importance for global food security. These crops have the capacity to provide nutritious sustenance and show strong adaptability to...

frontiersin.org
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A first genomic look at Ceratophyllum submersum, a plant thriving in eutrophic waters. This study assembled its plastome, shedding light on its evolution: doi.org/10.1186/s13104-023-0… #Genomics #Eutrophication #PlantScience 16/🧵

Phylogenetic placement of Ceratophyllum submersum based on a complete plastome sequence derived...

BMC Research Notes - Eutrophication poses a mounting concern in today’s world. Ceratophyllum submersum L. is one of many plants capable of living in eutrophic conditions, therefore it could...

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Fake papers are contaminating the world’s scientific literature, fueling a corrupt industry and slowing legitimate lifesaving medical research buff.ly/4heMnsh
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🍌 Bananas with a health boost? This study uncovers key transcription factors regulating anthocyanin biosynthesis in bananas! By decoding the MBW complex, the way for anthocyanin-packed bananas is paved: doi.org/10.1186/s13104-023-0… 🌱🔬 #BananaScience #Anthocyanins #Biotech 12/🧵

Three R2R3-MYB transcription factors from banana (Musa acuminata) activate structural anthocyanin...

BMC Research Notes - Bananas are one of the most popular fruits in the world, providing food security and employment opportunities in several developing countries. Increasing the anthocyanin...

link.springer.com
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Shefali@Shefali__J15 Feb 2025
😂😂
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Vaccinium species are not just tasty—they're packed with flavonoids that boost health & color! 🌿🔬 Recent advances in genomics are unlocking the secrets of these superfruits, paving the way for better berries! 🫐 doi.org/10.1093/plphys/kiad2… #PlantScience #Genomics #Flavonoids 11/🧵

Vaccinium as a comparative system for understanding of complex flavonoid accumulation profiles and...

Abstract. The genus Vaccinium L. (Ericaceae) contains premium berryfruit crops, including blueberry, cranberry, bilberry, and lingonberry. Consumption of V

academic.oup.com
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Plants are molecular goldmines! 🌿🔬 New advances in plant genomics unlock their medicinal potential by mapping biosynthetic genes. A data-driven revolution for drug discovery! 🚀 doi.org/10.1186/s12864-023-0… #Genomics #MedicinalPlants #Biotech 15/🧵

Medicinal plant genomics

BMC Genomics - Recent developments in plant genomics have enabled a comprehensive analysis of the medicinal potential of plants based on their gene repertoire. Genes of biosynthesis pathways can be...

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The thallium hyperaccumulator Viola allchariensis at the Allchar site in North Macedonia. It is a steno-endemic species that is incredibly rare and known from perhaps only a few hundred individuals growing on arsenic-thallium enriched soils.
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Ryan Els
@RyanEls415 Feb 2025
Push to production and run 🤣
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🌿❄️ In the freezing, UV-intense Himalayas, Rheum nobile developed specialized leaves that trap warmth and filter light — creating mini-greenhouses. Genome analysis uncovers genetic networks behind this adaptation: doi.org/10.1038/s42003-023-0… #Evolution #Botany #Genomics 14/🧵

The genome of the glasshouse plant noble rhubarb (Rheum nobile) provides a window into alpine...

Communications Biology - A high-quality genome assembly and phylogenetic analysis for the glasshouse plant, Rheum nobile, shed light on its evolutionary history and ability to adapt to intensive UV...

nature.com
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Comparative population pangenomes reveal unexpected complexity and fitness effects of structural variants doi.org/10.1101/2025.02.11.6… Comparison of read mapping and variant calling tools for the analysis of plant NGS data doi.org/10.1101/2020.03.10.9…
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A cheater founds the winning lineages during evolution of a novel metabolic pathway doi.org/10.1101/2025.01.26.6… KIPEs3: Automatic annotation of biosynthesis pathways doi.org/10.1101/2022.06.30.4…
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Diversity and Ecological Functions of Anthocyanins preprints.org/manuscript/202… Plants with purple abaxial leaves: A repository of metrics from stomata distribution doi.org/10.1101/294553

Diversity and Ecological Functions of Anthocyanins

Anthocyanins are well known as colorants of flowers, but many other invisible functions might have been more important during the evolution of complex biosynthesis networks in plants. The number of...

preprints.org
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Which flavonoid biosynthesis genes are important in blueberry? Have a look at this study exploring traits in this important crop: doi.org/10.3389/fpls.2022.96… #CropScience #Genes 6/🧵
Anthocyanin phenotypic variation in blueberry. Reference: https://doi.org/10.3389/fpls.2022.964656

ALT Anthocyanin phenotypic variation in blueberry. Reference: https://doi.org/10.3389/fpls.2022.964656

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Only true biologists will understand... @BiosensingIns
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Not a single person can ever argue that the trainning of LLM's are not fully based on stolen IP. Of COURSE these bozos pirated books. Why would they ever pay anyone, especially artists, what they are worth. OpenAi surely did the same. tomshardware.com/tech-indust…

Meta staff torrented nearly 82TB of pirated books for AI training — court records reveal copyright...

Did they think they could get away with it?

tomshardware.com
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GenomeResearch retweeted
Ryan Els
@RyanEls411 Feb 2025
Data sharing 😊
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Evolution of FNS I from F3H: doi.org/10.1371/journal.pone… #PlantMetabolism #Evolution 9/🧵

Apiaceae FNS I originated from F3H through tandem gene duplication

Background Flavonoids are specialized metabolites with numerous biological functions in stress response and reproduction of plants. Flavones are one subgroup that is produced by the flavone synthase...

journals.plos.org
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Pangenome graph augmentation from unassembled long reads doi.org/10.1101/2025.02.07.6… Pangenome of cultivated beet and crop wild relatives reveals parental relationships of a tetraploid wild beet doi.org/10.1101/2023.06.28.5… #Pangenome #Bioinformatics
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Long-read detection of transposable element mobilization in the soma of hypomethylated Arabidopsis thaliana individuals doi.org/10.1101/2025.02.07.6… 25 years of propagation in suspension cell culture results in substantial alterations of the A. thaliana genome doi.org/10.1101/710624
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