Pathogen Genomics and Evolution Group at the University of Cambridge Vet School
Joined November 2021
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PathGenEvo Cam retweeted
I'm pleased to announce the second edition of our "Working with Bacterial Genomes" course is now open for registration: training.cam.ac.uk/bioinform…
PathGenEvo Cam retweeted
Very pleased to share a a small study a long time in the making:
Colonization and transmission of Staphylococcus aureus in schools: a citizen science project microbiologyresearch.org/con…
PathGenEvo Cam retweeted
In a new blog, @princeasaregh discusses his bioinformatics journey at @NMIMR_UG in Ghana and @PathGenEvoCam in Cambridge.
cambridge-africa.cam.ac.uk/c…
PathGenEvo Cam retweeted
Our paper looking at Mycobacterium avium Complex genomics and transmission in a London hospital is out in ERJ:
erj.ersjournals.com/content/…
Congrats Zannah!
Here we go!! It's official!
I've been accepted by @CamVetSchool to pursue a PhD in Biological Sciences with @JulianParkhill!
And delighted to be joining the @clarehall_cam family as well!
🥳🧫🦠🧬📚
Well done Aaron. Great talk as always
Congratulations to Research Afternoon Presentation winners Julie Lin (Best poster) and Aaron Weimann (best Blitz talk). Well done to them both for their excellent presentations! @CamVetSchool
PathGenEvo Cam retweeted
🚨 Our new preprint is up 🚨
biorxiv.org/content/10.1101/…
We show that mutational spectra enable inference of local SARS-CoV-2 replication niche within the respiratory tract
Thread below 🧵 1/10
PathGenEvo Cam retweeted
From @DorothyYeboahM1's @DYMLab_NMIMR in @NMIMR_UG, currently @CamVetSchool with the @PathGenEvoCam group on a collaborative research project supported by @AfrResExFund and @CambridgeAfrica. I was warmly received by my host sponsors @JulianParkhill @jw132 @Triedzi on the 1st day
PathGenEvo Cam retweeted
🚨 Our new preprint is up 🚨
biorxiv.org/content/10.1101/…
We show that we can use mutational spectra to predict bacterial niche and transmission routes
Thread below 🧵 1/14
Welcome to the group @princeasaregh. We're looking forward to working with you over the next few months
Our article on Global spatial dynamics and vaccine-induced fitness changes of Bordetella #pertussis is out in @ScienceTM!
Using #phylogenetic models, we investigate #pertussis spatial #spread, and #fitness shifts in response to vaccine changes.
🧵1/10
science.org/doi/10.1126/scit…
PathGenEvo Cam retweeted
To help examine potential SARS-CoV-2 recombinant lineages, I've written bammix which examines potential mixtures at a set of positions in a BAM file
Docs and installation instructions at github.com/chrisruis/bammix
@PangoNetwork 1/3
PathGenEvo Cam retweeted
#Microbio22 come and see my poster! It’s arms reach from bar 2…..and learn about evolution of Streptococcus equi too 😀
PathGenEvo Cam retweeted
Congratulations to @Doktor_Basti, Theresa Feltwell, @JulianParkhill and @DrFranShort which won the best #PathogDis article for 2021! 🎉 We interviewed all the authors to find out the inspiration behind this paper @PathGenEvoCam
fems-microbiology.org/commun…
Well done particularly to Fran and Seb who drove this work.
Congratulations to the Parkhill group, who have won the best 2021 article award of the FEMS journal Pathogens and Disease! fems-microbiology.org/commun… @Doktor_Basti @JulianParkhill @AmotherT @DrFranShort
PathGenEvo Cam retweeted
Our collaboration with Imperial College and the Royal Brompton Hospital looking at transmission of Mycobacterium avium Complex species is now out in medRxiv:
medrxiv.org/content/10.1101/…
@DrKartikKumar @RBandH @PathGenEvoCam @o_cookson @MoffattMiriam @JulianParkhill @mloebinger
PathGenEvo Cam retweeted
The John Maddox Prize 2021 goes to Elisabeth Bik, @MicrobiomDigest, Microbiologist and Science Integrity Consultant @SpringerNature
PathGenEvo Cam retweeted
We're pleased to announce that our work looking at bovine TB transmission between badgers and cattle using isolates from the RBCT is now out in PLoS Pathogens: bit.ly/3FW0cJ1
Thanks to our collaborators @APHAgovuk @jw132 @monkeymyshkin @PathGenEvoCam @keithajolley
PathGenEvo Cam retweeted
New preprint with @PathGenEvoCam describing a scalable method of analysis from bacterial genomes to epidemiological results bit.ly/3qZgYmc
PathGenEvo Cam retweeted
Our #autism #microbiome paper “Autism-related dietary preferences mediate autism-microbiome associations” is out in @CellCellPress today! authors.elsevier.com/c/1e3XW… Thread below (1/n) 👇:
