@PASeq_HIV

PASeq is a cloud-based, scalable web service that provides automated data analysis for HIV genotyping from NGS high throughput data.

paseq.org
Joined April 2017
  • Tweets176
  • Following103
  • Followers66
6Media
PASeq is a cloud-based web platform for HIV Drug Resistance Testing using NGS high throughput platforms. From the raw data to an HIV resistance report in a click!
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400 users! Keep them coming!
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Attending #ECCMID23 for a change! If you are using PASeq and want to meet, please DM!
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Nice alternative for HIV-DR NGS-based data analysis. Built on Nextflow and for local execution! academic.oup.com/bioinformat…

QuasiFlow: a Nextflow pipeline for analysis of NGS-based HIV-1 drug resistance data

AbstractSummary. Next-generation sequencing (NGS) enables reliable detection of resistance mutations in minority variants of human immunodeficiency virus t

academic.oup.com
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PASeq_HIV retweeted
IrsiCaixa@IrsiCaixa21 Oct 2022
🔔 Today is the last day of the @mistralhiv Constortium Meeting 2022. 👥 For two days, the partners of the @HorizonEU project coordinated by #IrsiCaixa shared their scientific progress and updates on the study. 👏 Happy to be part of this great collaborative work!
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35.000 jobs performed on genomic data analysis of both HIV-1 and SARS-CoV-2.
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Happy to see the first publication on SARS-CoV-2 that uses PASeq for genomic data analysis in the ACTIV-2 trial! PASeq has been used to detect mutations in genomic datasets from mAb treated patients. medrxiv.org/content/10.1101/…

Emergence of SARS-CoV-2 Resistance with Monoclonal Antibody Therapy

Resistance mutations to monoclonal antibody (mAb) therapy has been reported, but in the non-immunosuppressed population, it is unclear if in vivo emergence of SARS-CoV-2 resistance mutations alters...

medrxiv.org
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We have upgraded the guts of PASeq. Users shouldn't notice anything! (hopefully)
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Just reached 25.000 analyzed samples! Keep them coming!
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PASeq has now processed more than 21.000 samples. Users from more than 30 countries. Early reacted to adapt to SARS-CoV-2 NGS data analysis needs and processed lots of those genomes. More coming! Bring it on!
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Glad to help!
Dr_Choudhary (वायरस वाले डॉक्टर) 🕉️🇮🇳 🇺🇸@Dr_MChoudhary15 Mar 2021
Amazingly good tool for minority variant analysis; adapted for SARS-CoV-2 now...
bit.ly/2qFBbio can perform one-click cloud-based analysis for SARS-CoV-2 NGS data (illumina at present). Results consist of QC, consensus sequences, and amino acid variant list. Give it a try!
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We're hiring! @hyraxbio is seeking a bus dev lead to join our team, applications close on 12th August. See more at shorturl.at/ckF27 #lifesciences #diagnostics #businessdevelopment #remotejobs
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PASeq surpassed 17.000 analysis jobs! So happy! We are now working on data zoning, so your data is physically in specific data centers. Are you interested in additional PASeq features?
PASeq_HIV retweeted
ESCI-UPF@ESCIupf6 May 2020
🗞️@alex6mo i @lauraserrar també han parlat amb @marc_noguera, investigador d'@IrsiCaixa, sobre com s'ha desenvolupat el software per seqüenciar el genoma del SARS-CoV-2 i sobre les futures línies d'investigació de la COVID-19 #ESCIUPFNews esciupfnews.com/es/2020/05/0…
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Glad to share that the work with @rubenmasb, @jaleman2 amd @seloxcat has just been accepted in @DaltonTrans. Thanks for inviting me to participate in this nice project. @CompBioNanoCat @qfuab pubs.rsc.org/en/content/arti…

Organocatalytic vs. Ru-based electrochemical hydrogenation of nitrobenzene in competition with the...

The electrochemical reduction of organic contaminants allows their removal from water. In this contribution, the electrocatalytic hydrogenation of nitroben

pubs.rsc.org
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PASeq can now analyze NGS data from whole 2019-nCov genome! From the raw data to the genome sequence and spike variant list just in a click!
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PASeq_HIV retweeted
Eric Topol
@EricTopol8 Apr 2020
10 severely patients w/ #COVID19 got 1 dose of convalescent plasma from a pooled group of donors who had recovered. The results, while in a limited number of patients, are encouraging by supporting safety and the role of neutralizing antibodies pnas.org/content/early/2020/… @PNASNews
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PASeq, a data analysis option for HIV DRT in "Genotypic Methods for HIV Drug Resistance Monitoring: The Opportunities and Challenges Faced by China" eurekaselect.com/175189/arti…
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PASeq used for validation of new PANDAA-monium molecular method for SNP detection in HIV quasispecies. bit.ly/2SFD8bQ
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Great to see PASeq performing so well un this creat paper compartint several data analysis pipelines for NGS bases HIVDRT!! nature.com/articles/s41598-0…
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