@OpenVax

Open source software for algorithmic vaccine design and personalized cancer vaccines

 New York, NY
openvax.org
Joined January 2018
  • Tweets37
  • Following31
  • Followers258
2Media
I wrote up a quick tutorial on getting started with the @OpenVax cancer neoantigen vaccine pipeline: openvax.org/blog/openvax-neo…

OpenVax Neoantigen Prediction Pipeline: A Tutorial

We've previously written about the OpenVax neoantigen prediction pipeline, which is the computational basis of 3 clinical trials at Mount Sinai. The purpose of this post is to prov

openvax.org
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What's your favorite place to send your sequencing libraries to get sequenced?
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MHCflurry 2.0 released (MHC binding and antigen processing predictor), see thread below for the associated paper
Tim O'Donnell@timodonnell14 Jul 2020
Our paper on MHC I ligand prediction is out today at Cell Systems! Some background and summary below. 1/ cell.com/cell-systems/fullte…
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We took a really professional photo for @ACIR_org
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We are hiring! Interested in cutting edge computational research at the intersection of cancer, immunology and evolutionary dynamics? If so please apply: nature.com/naturecareers/job… @IcahnMountSinai
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Very excited about our new Center for Computational Immunology at the Tisch Cancer Institute to help to bring together some great researchers on this important topic!!! @SinaiImmunol @IcahnMountSinai @TischCancer newswise.com/articles/the-ti…
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Beautiful talk by @MiriamMerad! @AACR describing phenotypic and functional diversity across DC subsets within the TME
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Very proud of grad student, Dan Fu Ruan @df_ruan1 for stellar job in presenting effects of HLA-E expression as a major determinant of antitumor function at @KeystoneSymp . Thanks very much for the opportunity to present @Dr_Nick_Bikes @EricVivier1 #CarolineRobert an #LewisLanier!
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Ana Blazquez-Gonzalez from #BhardwajLab describes the Phase I clinical study she coordinates to evaluate a multi-peptide personalized neoantigen cancer vaccine. #PriismWIP
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Big congratulations to @DrJohnSfakianos #BhardwajLab @AmirHorowitz @MattGalsky @adam_farkas1 for being awarded @DeptofDefense funding to study the role of #NK cells in #bladdercancer. Exciting days ahead for more translational science at MSSM!
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Claudia Jakubzick: Work hard, play hard jem.rupress.org/content/216/…
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John Grout, phD student from Merad/Salmon lab performs #singlecell sequencing, #cytof and multiplex immunohistochemistry to characterize the stromal cell compartment of early stage #lung cancer. #PriismWIP
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We have an opening for a new faculty member in Cancer Computational Immunology at OHSU. Fantastic opportunity for high impact work, great colleagues, great place to build a career. Please retweet and DM/email me if you have any questions. ais.ohsu.edu/OA_HTML/OA.jsp?…
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Wow what an inspirational story! jem.rupress.org/content/earl…
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Happy New Year⁠ ⁠2019! May your data be replicable, your grants funded, your applications approved and our scientific knowledge improved! #2019
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OpenVax retweeted
ACIR
@ACIR_org14 Dec 2018
Spotlight: (Original article appears in @eLife ow.ly/kwgI30mXFmL) @rongejman @A_YChang @WeillCornell @sloan_kettering #MHC #neoantigen
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Presenting on clinical genomics & cancer immunotherapy in kidney cancer at @sitcancer #SITC18 right now. Not here or want to follow along online? Here’s my presentation! <1/n>
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Replying to @IcahnInstitute
@IcahnInstitute & @OpenVax looking for candidates to work on bioinformatics for personalized cancer vaccines. Any convex combination of {bio, compsci} background welcome. Send me your resume ([email protected])
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#CICON18 posters at B079 and B080
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We just published our work on defining a standard file format for annotated antibody and TCR sequences, with current or planned support from many of your favorite tools. Check it out! #airr cc @bcr_tcr frontiersin.org/articles/10.…

Frontiers | AIRR Community Standardized Representations for Annotated Immune Repertoires

Increased interest in the immune system's involvement in pathophysiological phenomena coupled to decreased DNA sequencing costs have led to an explosion of a...

frontiersin.org
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