Supporting and promoting openness and reproducibility in plant pathology as well as human equality we're most active at https://xitter.cf/t.co/TtXM0wzMCt.
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Joined January 2018
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Open Plant Pathology retweeted
New addition to the R4PDE book. A shiny app that allows to visualize the shapes of four population dynamics models by varying initial inoculum and infection rate.
edelponte.shinyapps.io/epide…
@OpenPlantPath
Open Plant Pathology retweeted
Very cool new tool for plant disease severity training from @edelponte at edelponte.shinyapps.io/train…
Choose leaf and lesion parameters and start training!
@OpenPlantPath @ufvplantpath @TropPlantPathol @plantdisease #IPM #agtwitter @planthealthprog
ALT Screenshot of severity training tool at https://edelponte.shinyapps.io/traineR/
Open Plant Pathology retweeted
The time has come, we’re now also on Mastodon, scicomm.xyz/@openplantpathol… please join us!
The time has come, we’re now also on Mastodon, scicomm.xyz/@openplantpathol… please join us!
We have a new blog post by @edelponte. Fit nonlinear models in #rstats to infection as a function of temperature and wetness duration openplantpathology.org/posts…
Share your data (#FAIRdata) and your code!
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If you're interested in #PSHB responses from a biosecurity perspective, @IrelandKylie has shared her recent @CCH_USQ seminar with us. It's available now on our YouTube channel. openplantpathology.org/posts…
Beetle (Polyphagous Shot Hole Borer) + #fungus Fusarium euwallaceae = #Fusarium #Dieback in multiple tree species.
@Shannon_C_Lynch discussed their work on endophytic #microbiome in this beetle-pathogen system using culture-based and metabarcoding approaches.
#PSHB @NPDN
ALT Shannon Lynch discussed their work on endophytic microbiome in this beetle-pathogen system using culture-based and metabarcoding approaches.
ALT Host species affected by Fusarium dieback disease.
ALT In vitro inhibition bioassays in Fusarium Dieback complex system.
👀 New resource for #RStats users! A CRAN Task View for agriculture. Yes, it includes (a small) plant pathology section. Get busy and contribute, plant pathology community!
New CRAN Task View: Agricultural Science
#agriculture #rstats
By Julia Piaskowski @seedsandbreeds, Adam Sparks @adamhsparks, Janet Williams
URL: CRAN.R-project.org/view=Agri…
ALT Screenshot of the CRAN Task View "Agriculture" from https://CRAN.R-project.org/view=Agriculture
The time invested in learning version control, e.g. Git, SVN, etc. is well worth it for many scientists that conduct computational research. It makes it easier to track your code changes and share your code too!
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He will be missed!
Please post your messages, images, or videos to celebrate Dr. Madden's retirement kudoboard.com/boards/NazQ2iL…
Fantastic to see our interview with @KamounLab being discussed again!
Here be dragons! New technologies like AI and Machine Learning are fantastic tools, but we should proceed with caution and know how to properly use them. #ReproducibleResearch
Could machine learning fuel a reproducibility crisis in science? nature.com/articles/d41586-0…
Hear, hear!
I just published: Open science to tackle plant health emergencies: enough excuses please. link.medium.com/A5BpxpgOLrb
Open Plant Pathology retweeted
This is a great idea, one place to find all the seminars from the Qld branch of APPS.
Well done @QldApps @OpenPlantPath 👏🥳
We're happy to support the @QldApps of @Plant_Pathogens.
Recordings of previous seminars are on our @YouTube channel, youtube.com/playlist?list=PL…
More information is available from our website as well, openplantpathology.org/#cate…
#OpenScience
We're happy to support the @QldApps of @Plant_Pathogens.
Recordings of previous seminars are on our @YouTube channel, youtube.com/playlist?list=PL…
More information is available from our website as well, openplantpathology.org/#cate…
#OpenScience
Open Plant Pathology retweeted
Western Sydney Uni has a competitive PhD scholarship round open for a January start. If you are interested in applying for a project concerning (1) molecular signaling in chickpea disease resistance, or (2) plant signaling proteins involved in ectomycorrhizal symbiosis, DM me!
ALT chickpea nodules and eucalyptus colonized by pisolithus
👀 "The datasets and custom R scripts generated and/or analyzed in this study are available in the @figshare repository, doi.org/10.6084/m9.figshare.…" 🤩🙌 #ReproducibleResearch #OpenScience
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For all of you plant-microbe-soil interaction fans, we've a new USQ CCH seminar by @ch_birnbaum on our Youtube Chanel! openplantpathology.org/posts… #OpenScience
Open Plant Pathology retweeted
@OpenPlantPath Help with stats. I need to analyze a time series experiment. qPCR data of viruses from potato tubers over time (6mo). I want to find the best detection window among other things. Any good references for time series in R?