@MiningGenome

Interested in #genomics #bioinformatics #plants #metabolism

Joined July 2020
  • Tweets8K
  • Following541
  • Followers1.2K
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FrustraMPNN: tool for proteome-scale analysis of deep mutational single-residue local energetic frustration in proteins doi.org/10.64898/2026.01.22.… NAVIP: Unraveling the Influence of Neighboring Small Sequence Variants on Functional Impact Prediction doi.org/10.1101/596718
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JanusX: an integrated and high-performance platform for scalable genome-wide association studies and genomic selection doi.org/10.64898/2026.01.20.… Genomic characterization of a nematode tolerance locus in sugar beet doi.org/10.1101/2023.06.22.5…
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Rare shell colours in bivalves reveal multiple evolutionary pathways to blue and green colouration doi.org/10.64898/2026.01.21.… Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae doi.org/10.1101/2025.10.06.6… #Evolution #Genomics
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FastSpeciesTree: Fast and Scalable Species tree Inference doi.org/10.64898/2026.01.20.… Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae doi.org/10.1101/2025.10.06.6…
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Phased genome assembly reveals post-allopolyploidization subgenomic diversification of tobacco centromeres doi.org/10.64898/2026.01.19.… Genome sequence and RNA-seq analysis reveal genetic basis of flower coloration in the giant water lily Victoria cruziana doi.org/10.1101/2024.06.15.5…
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Pangenome Analysis of Pyrus Reveals Potential Role of Transcription Factors in Recent Adaptation to Arid Environments doi.org/10.64898/2026.01.20.… Pangenome of cultivated beet and crop wild relatives reveals parental relationships of a tetraploid wild beet doi.org/10.1101/2023.06.28.5…
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On the correctness of gene tree tagging and the consistency of ASTRAL-pro under a unified model of gene duplication, loss, and coalescence doi.org/10.64898/2026.01.20.… DupyliCate - mining, classifying, and characterizing gene duplications doi.org/10.1101/2025.10.10.6…
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Pangenome analysis reveals the evolutionary dynamics of repeat-based holocentromeres doi.org/10.64898/2026.01.17.… Pangenome of cultivated beet and crop wild relatives reveals parental relationships of a tetraploid wild beet doi.org/10.1101/2023.06.28.5… #Genomics #Bioinformatics
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A drought stress-induced MYB transcription factor regulates pavement cell shape in leaves of European aspen (Populus tremula) doi.org/10.64898/2026.01.16.… Automatic identification and annotation of MYB gene family members in plants doi.org/10.1101/2021.10.16.4… #PlantSci
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Evolutionary dynamics of the proanthocyanidin biosynthesis gene LAR doi.org/10.1186/s12864-025-1… #Evolution #FlavonoidBiosynthesis #PlantSciences #Bioinformatics #Genomics #SciComm #OpenScience
Evolutionary dynamics of the proanthocyanidin biosynthesis gene LAR https://doi.org/10.1186/s12864-025-12429-5

ALT Evolutionary dynamics of the proanthocyanidin biosynthesis gene LAR https://doi.org/10.1186/s12864-025-12429-5

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Conservation of non-consensus nucleotides in transcription factor binding sites doi.org/10.64898/2025.12.07.… Automatic identification and annotation of MYB gene family members in plants doi.org/10.1101/2021.10.16.4… #TranscriptionFactors #GeneExpression
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Sweet signals: Using floral traits to predict nectar sugar availability doi.org/10.64898/2026.01.14.… Genome sequence of the ornamental plant Digitalis purpurea reveals the molecular basis of flower color and morphology variation doi.org/10.1101/2024.02.14.5… #Genomics #Evolution #Ecology
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Arabidopsis TITAN LIKE is required for U12-type intron splicing, especially for AT–AC subtypes doi.org/10.1101/2025.02.25.6… Animal, fungi, and plant genome sequences harbour different non-canonical splice sites doi.org/10.1101/616565 #Genomics #Bioinformatics
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Long-read sequencing is rewriting plant genomics! 🌱 With Oxford Nanopore & PacBio tech, even huge, complex genomes can be assembled faster and with higher quality. This paper explores progress, challenges, and what’s next 🚀🔬 doi.org/10.1017/qpb.2021.18 #Genomics #PlantScience
Long-read sequencing is rewriting plant genomics! 🌱 With Oxford Nanopore & PacBio tech, even huge, complex genomes can be assembled faster and with higher quality. This paper explores progress, challenges, and what’s next 🚀🔬 https://doi.org/10.1017/qpb.2021.18 #Genomics #PlantScience

ALT Long-read sequencing is rewriting plant genomics! 🌱 With Oxford Nanopore & PacBio tech, even huge, complex genomes can be assembled faster and with higher quality. This paper explores progress, challenges, and what’s next 🚀🔬 https://doi.org/10.1017/qpb.2021.18 #Genomics #PlantScience

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HapBridge: A Methylation-Guided Approach for Correcting Switch Errors and Bridging Phased Blocks in Long-Read Phasing doi.org/10.1101/2025.11.07.6… Cookbook for Plant Genome Sequences doi.org/10.20944/preprints20…
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Diversity and ecological functions of anthocyanins doi.org/10.1186/s12870-025-0…

Diversity and ecological functions of anthocyanins

BMC Plant Biology - Anthocyanins are well known as colorants of flowers, but many other invisible functions might have been more important during the evolution of complex biosynthesis networks in...

link.springer.com
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GenomeMining retweeted
Steve Marek@stephenmarek2Jan 9
The molecular basis of the binding and specific activation of rhizobial NodD by flavonoids | Science science.org/doi/10.1126/scie…
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GenomeMining retweeted
Plant Physiology@PlantPhysJan 8
ROTIS: A RUBY-assisted one-shot tissue-culture-free system for in-planta soybean transformation from germinated seedlings (Yongguang Li , Ke Lu , Shunli Feng , Ran Ning , Haiyan Li , Xue Zhao , Yubing He , Yingpeng Han) doi.org/10.1093/plphys/kiaf6… @ASPB #PlantSci
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Genome-wide & stress-responsive landscape of the Pectin methylesterase gene family in cucumber & muskmelon doi.org/10.64898/2026.01.08.… Large-scale Phylogenomics Reveals Systematic Loss of Anthocyanin Biosynthesis Genes at the Family Level in Cucurbitaceae doi.org/10.1101/2025.10.06.6…
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GenomeMining retweeted
Agristok@agristokJan 8
Two PhD Positions in Plant Pathology at Kiel University (CAU), Germany – Start March 2026: agristok.net/2026/01/08/phd-… via @agristok
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