@MetaMoritz

Microbes of all sorts, mainly aquatic, but open to all biomes. That is what I use my bioinformatics for. Also posting baby stuff now apparently, for some reaso

 Uppsala, Sverige
Joined May 2016
  • Tweets841
  • Following337
  • Followers431
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Apply to this long-term #postdoc position! Come and join us in our marvelous path towards understanding the role of phage co-infection in their genome evolution and become a member of the *MULTIPHAGE* #ERCStG team! Please retweet or is it reX now😉 slu.se/en/about-slu/work-at-…

Jobs and vacancies | slu.se

Would you like to join us in creating the conditions for a sustainable, thriving and better world? Welcome with your application!

slu.se
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Great to see this one out! A long-term project and central piece in the theses of two talented PhD students: @agmontaner and Karl Dyrhage. Congrats to both and all other contributors!
GBE (Genome Biology and Evolution)
@GenomeBiolEvol25 Nov 2022
Genome Evolution of a Symbiont Population for Pathogen Defense in Honeybees buff.ly/3gmteKz @agmontaner @DanielTamarit @OlofssonTbs @MattTWebster #science #evolution #biology #genomes #SciComm
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I did 1,023 DNA extractions so you don't have to! Data announcement for our 20-yr lake time series is now live on bioRxiv: @quendi @mcmahonlab @WiscLimnology @USLTER (1/6) biorxiv.org/content/10.1101/…

Lake iTag measurements over nineteen years, introducing the limony dataset

Lakes are focal points of biogeochemical cycling on the terrestrial landscape, and microbial communities are the machines driving these processes. However, our view into how freshwater microbial...

biorxiv.org
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Looking for a #PhDposition? Are you interested to learn about how microbes interact and co-evolve? Join our interdisciplinary group @_SLU in beautiful Uppsala! Topic: Impact of viruses on lake phytoplankton Please RT and apply 👇 slu.se/en/about-slu/work-at-…

Jobs and vacancies | slu.se

Would you like to join us in creating the conditions for a sustainable, thriving and better world? Welcome with your application!

slu.se
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A nice preprint by Fernando, Matthias, @MetaMoritz and @Stebe69! 👏👏 Exploring intra-species diversity through non-redundant pangenome assemblies biorxiv.org/content/10.1101/… – at Uppsala, Sverige

Exploring intra-species diversity through non-redundant pangenome assemblies

At the genome level, microorganisms are highly adaptable both in terms of allele and gene composition. Such heritable traits emerge in response to different environmental niches and can have a...

biorxiv.org
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Moritz Buck retweeted
Eric Capo@ericcapo1215 Mar 2022
We have been working on providing a snakenake-implemented bioinformatic pipeline allowing to detect and identify genes from fastq files. with contributions from @MetaMoritz Fernando Puente Sánchez @el_pableras Hope you will like it! (3/6) github.com/ericcapo/marky-co…

GitHub - ericcapo/marky-coco: Ready-to-use pipeline to detect, count and identify the hgcAB genes,...

Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes - ericcapo/marky-coco

github.com
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Join us for an exciting discussion about the dynamic interface of cultivation and environmental omics!! Looking forward to "meet" you on Zoom November 17 and 18! Register in this link to get the zoom info: slu-se.zoom.us/meeting/regis…
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We need urgently a PhD student with finished Master to do a thesis in Alicante within a project on flexible genome of marine bacteria. Please contact me ASAP [email protected]
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Question Tweeps: What is the best paper out there to look at gene loss (prok or euk) as being transformative in evolution - but not in the area of symbiosis or syntrophies, etc. Just gene loss, while staying independent. Any pointers welcome...
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Moritz Buck retweeted
Lior Pachter@lpachter27 Aug 2021
It's time to stop making t-SNE & UMAP plots. In a new preprint w/ Tara Chari we show that while they display some correlation with the underlying high-dimension data, they don't preserve local or global structure & are misleading. They're also arbitrary.🧵biorxiv.org/content/10.1101/…
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#SARSCoV2 wastewater data from #Stockholm #Uppsala #Umeå #Örebro till week 32 now available on the #Covid19dataportal More:covid19dataportal.se/data_ty… @ZCetecioglu @mikromara @malmberg_maja @scilifelab @KTHuniversity @_SLU
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Moritz Buck retweeted
clara T@ramencult19 Aug 2021
my body is not a temple it is a Conda environment
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With sourmash v4.2, we introduced a new module, sourmash tax (alias: taxonomy) for integrating taxonomic information into sourmash gather results. developed with @ctitusbrown @luizirber @ReiterTaylor @hannahhouts full blog post: bluegenes.github.io/sourmash…
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Moritz Buck retweeted
Lisa Klasson@lisaklas20 Jul 2021
The final version of our paper about factors involved in cytoplasmic incompatibility of #Wolbachia is now in @GenomeBiolEvol With @gbaiao, Jessin Janice and Maria Galinou. academic.oup.com/gbe/article…

Comparative Genomics Reveals Factors Associated with Phenotypic Expression of Wolbachia

Abstract. Wolbachia is a widespread, vertically transmitted bacterial endosymbiont known for manipulating arthropod reproduction. Its most common form of r

academic.oup.com
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Funded #postdoc & #phd positions - Join a fantastic team and important research project lead by @PaqlabU & I @USherbrooke @biologieUdeS @UQAM @sciencesUQAM @CEF_CFR @centre_seve @NSERC_CRSNG @CSEE_SCEE @Csbq_qcbs_stu @Csbq_qcbs_stu @CRSNG_NSERC @CIHR_ICRH @CIHR_IHDCYH @CIHR_IRSC
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I am excited to share our work @NatureComms A great experience with @Stebe69 @Dopsongrp @MetaMoritz @_Emma_Bell @simone_dome @BernierLabEPFL et al. Energy efficiency and biological interactions define the core microbiome of deep oligotrophic groundwater nature.com/articles/s41467-0…
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Trycycler: consensus long-read assemblies for bacterial genomes biorxiv.org/cgi/content/shor… #biorxiv_bioinfo
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Check out the abstract of our provisionally accepted article on lake water column #methanotrophs, especially Candidatus #Methylumidiphilus. Excellent work by Gaetan Martin et al. #metagenomics #methane #boreal #lake frontiersin.org/articles/10.…
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mOTUpan: a robust Bayesian approach to leverage metagenome assembled genomes for core-genome estimation biorxiv.org/content/10.1101/…
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We have a new paper out on plankton diversity in the Arctic, and it has a cool name too :) link.springer.com/article/10… #phytoplankton #Arctic #Lookingbacktothefuture

Looking back to the future—micro- and nanoplankton diversity in the Greenland Sea

Marine Biodiversity - Anthropogenic perturbations and climate change are severely threatening habitats of the global ocean, especially in the Arctic region, which is affected faster than any other...

link.springer.com
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