away from here
moved elsewhere
Joined December 2012
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I will not post more message here. Moving to blue, you can find me at @matthchavent to follow my recent research
matthieu Chavent retweeted
📢Hiring for a PhD position as part of #MSCA network of 17 students
@ComeInCell
Want to manipulate #condensates💧& membranes with light🌈?
Check out/apply:
👉bit.ly/4feLT4u
The project includes secondments at
@KGanzinger, Rossi Lab bit.ly/4hrJYel &
@NatureComms
matthieu Chavent retweeted
Looking for a M2 (or M1) intern for spring 2025 on "Computational investigation of the molecular mechanism of Ca2+-dependent
allosteric activation of the EndoU ribonuclease". Please share with anyone who may be interested.
sdrive.cnrs.fr/s/TzeJpne2aJq…
#compchem @IbpcF
Happy to be back in Paris for few days for the International Symposium on Membrane/Protein Interactions
voices.uchicago.edu/visualiz…
This is now published in @JPhysChem ! 🥳
@CbiToulouse @IpbsToulouse @CNRS_Toulouse @CNRSbiologie
pubs.acs.org/doi/10.1021/acs…
New preprint from a nice collaboration between the @IpbsToulouse Integrative Biological NMR team and my lab ( LMGM @CbiToulouse ): "Coarse-graining the recognition of a glycolipid by the C-type lectin Mincle receptor " spearheaded by @noriegamaxime
biorxiv.org/content/10.1101/…
matthieu Chavent retweeted
Do you want to work at the interface of structural biology and #AI? We are #hiring Come to Paris for a @CNRS postdoc at @institutpasteur funded by @ERC_Research and co-supervised by @malletvincent Please RT!! #deeplearning #compbio More info here: research.pasteur.fr/b/vVT
matthieu Chavent retweeted
MD simulations remain poorly shared, deficiently reproducible, and devoid of history. Together with Luis Walter and @JFRudzinski, we built Martignac: a computational workflow manager for CG Martini arxiv.org/abs/2409.15478 🧵
A new tutorial serie from @JustinLemkulVT . Cannot express enough how much this helps the community. All my students start with Justin's tutorials - and I regularly doing these exercises to refresh my mind. 😁
Thank you so much Justin! 🙏
And I have a second one - updated tutorials for
@GMX_TWEET version 2024! These are new and distinct from the other set of tutorials published a few years ago (those will get a refresh, too). I hope they are useful! #compchem #OA #GROMACS
pubs.acs.org/doi/10.1021/acs…
matthieu Chavent retweeted
And I have a second one - updated tutorials for
@GMX_TWEET version 2024! These are new and distinct from the other set of tutorials published a few years ago (those will get a refresh, too). I hope they are useful! #compchem #OA #GROMACS
pubs.acs.org/doi/10.1021/acs…
matthieu Chavent retweeted
New articles out this week in @JPhysChem! This article becomes is the new citation for the current versions of the CHARMM program. What an incredible team of developers to be a part of. #compchem #OA
pubs.acs.org/doi/10.1021/acs…
matthieu Chavent retweeted
Mesoscale Explorer molstar.org/me/ Paper out !! Excellent work with @asrmoin @dsgoodsell and @sehnaldavid
doi.org/10.1002/pro.5177
matthieu Chavent retweeted
We are organizing a @cecamEvents workshop on "Understanding Peripheral Protein-Membrane Interactions". Attending online is FREE, with registration by Sept. 18: lnkd.in/dQ7PBJYW
@martafilizola @gervasiolab @LindaColumbus @matteodp @ProfSyK @reuter_nathalie @LabVanni
En route for the CECAM workshop "Leveraging Machine Learning for Sampling Rare Events in Biomolecular Systems" Looking forward hearing cool science on this topic - and reconstitute for few days a little part of the @mark_sansom SBCB group with @pstansfeld @drannaduncan and Lukas!
matthieu Chavent retweeted
Yes, indeed!🙂 We are looking for #PhD candidates interested in #MD simulations and non-equilibrium #statmech methods are most welcome! #mirotubules #tau proteins @mpi_nat #JobOpening #CYTAC Please apply! 📨
Our @CompBioPhys department is hiring: Apply now as a PhD student for the project “Microtubule mechanical failure and interaction with tau proteins”.
More about the project 👇:
mpinat.mpg.de/grubmueller/mi…
Application info here 👇:
mpinat.mpg.de/28-24?c=250103…
matthieu Chavent retweeted
Thrilled to announce that the #OLIVES Gō-like model for #Martini3 #proteins is now published in @JCIM_JCTC ! Excited to have been part of this nice collaboration with Kasper Pedersen, Luís Borges Araújo, @AmandaDStange, @CG_Martini and Birgit Schiøtt. pubs.acs.org/doi/10.1021/acs…
matthieu Chavent retweeted
Nice idea to seek out simulation data on the web.
My guesstimate is that the 14 TB of data found equates to about 14 milliseconds of simulation. This is based on our data for proteins of various sizes stored in xtc files without solvent.
Our MDverse paper is now published in its final form in @eLife ! 🥳 It was a great collab & lot of fun to work with @pierrepo and @j0kaso
🙏 @eriklindahl , @LindorffLarsen , @DelemotteLab , @baam93 and co!
doi.org/10.7554/eLife.90061.…
We have a 2+ years EU funded postdoc position with @pierrepo based in Paris to extend this project.
Position can start beginning of 2025. Answer to this tweet if interested or contact me or @pierrepo
Our MDverse paper is now published in its final form in @eLife ! 🥳 It was a great collab & lot of fun to work with @pierrepo and @j0kaso
🙏 @eriklindahl , @LindorffLarsen , @DelemotteLab , @baam93 and co!
doi.org/10.7554/eLife.90061.…
Our MDverse paper is now published in its final form in @eLife ! 🥳 It was a great collab & lot of fun to work with @pierrepo and @j0kaso
🙏 @eriklindahl , @LindorffLarsen , @DelemotteLab , @baam93 and co!
doi.org/10.7554/eLife.90061.…
There are more and more MD data available on these repositories ! Here is an updated version of the graph that we stopped in 2022.
2023 and 2024 (until May) are following the same trend!
just in 2023 >100k files related to MD where deposited online. 🤯
We will continue to update in the coming months our little MDverse prototype ( mdverse.streamlit.app ) to render all these data available to all!
