@MagesLab
Joined September 2022
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📢 Out in Nat Med: Single-cell, nucleus & 4 types of spatial expression data across the clinicopathological diversity of metastatic breast cancer! We find surprising within-patient stability, spatial EMT phenotypes, local immune exclusion, and more + comparison across methods🔗➡️
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📢BoReMi for manual registration of spatial expression data 🧬 and microscopy images 🔬. When automated tools fail 🥺 BoReMi is your friend💪. Lightweight Jupyter interface, Single cell matching, Non-linear alignment, and more. #spatial_omics #registration #groundtruth
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scPrisma is out in @NatureBiotech : scPrisma is a framework for enhancement and filtering of topological signals from #SingleCell data based on spectral template matching. Together with Yoni Bornfeld and @mor_nitzan. Paper: go.nature.com/3IxEk9H Code: github.com/nitzanlab/scPrism…

scPrisma infers, filters and enhances topological signals in single-cell data using spectral...

Nature Biotechnology - scPrisma deconvolutes different biological processes in single-cell RNA-sequencing data.

nature.com
Nature Biotechnology
@NatureBiotech27 Feb 2023
scPrisma infers, filters and enhances topological signals in single-cell data using spectral template matching go.nature.com/3IxEk9H
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Our “epigenetic zoo” is finally published! DNA methylation profiles for 580 animal species and 2443 tissue samples provide an evolutionary perspective on the epigenome. Full paper: nature.com/articles/s41467-0… (open access) #epigenome #evolution #crossspecies #epigenetics [1/9]
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